View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9338_low_8 (Length: 243)

Name: NF9338_low_8
Description: NF9338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9338_low_8
NF9338_low_8
[»] chr6 (7 HSPs)
chr6 (84-237)||(4845902-4846057)
chr6 (62-120)||(3835743-3835801)
chr6 (62-120)||(19973657-19973715)
chr6 (19-108)||(14579607-14579700)
chr6 (62-120)||(19976075-19976133)
chr6 (19-94)||(19697882-19697961)
chr6 (76-120)||(24045020-24045064)
[»] scaffold0076 (1 HSPs)
scaffold0076 (58-243)||(6839-7013)
[»] chr1 (4 HSPs)
chr1 (125-243)||(9111649-9111767)
chr1 (65-140)||(21501345-21501419)
chr1 (22-101)||(43254110-43254193)
chr1 (23-94)||(1953689-1953764)
[»] chr8 (1 HSPs)
chr8 (127-241)||(41739972-41740090)
[»] chr4 (2 HSPs)
chr4 (19-158)||(895382-895523)
chr4 (58-101)||(31767527-31767570)
[»] chr3 (5 HSPs)
chr3 (56-158)||(16366443-16366540)
chr3 (19-111)||(2353181-2353277)
chr3 (58-140)||(26445173-26445255)
chr3 (59-113)||(9372292-9372346)
chr3 (62-113)||(14654856-14654907)
[»] chr5 (2 HSPs)
chr5 (19-109)||(13291940-13292034)
chr5 (62-127)||(16819573-16819638)
[»] scaffold0002 (1 HSPs)
scaffold0002 (23-120)||(448697-448795)
[»] scaffold0028 (2 HSPs)
scaffold0028 (19-94)||(110123-110201)
scaffold0028 (19-94)||(127702-127780)
[»] chr7 (4 HSPs)
chr7 (19-112)||(15569550-15569647)
chr7 (58-120)||(13815714-13815776)
chr7 (62-112)||(2609685-2609735)
chr7 (23-108)||(15169923-15170012)
[»] scaffold0216 (1 HSPs)
scaffold0216 (58-119)||(12090-12151)
[»] chr2 (2 HSPs)
chr2 (58-120)||(27107279-27107341)
chr2 (62-110)||(8424432-8424480)


Alignment Details
Target: chr6 (Bit Score: 116; Significance: 4e-59; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 84 - 237
Target Start/End: Original strand, 4845902 - 4846057
Alignment:
84 tgacagaacaaattgaatttgataaacacaagagatgtaatccaggaagaaatattgggaagaaagaaagagtttttgtgttggtggaaaagtggta-tt 182  Q
    ||||||||||| |||||||||||||||||  ||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||    
4845902 tgacagaacaacttgaatttgataaacacgggagatgtaacccaggaagaaaaattgggaagaaagaaagagcttttgtgttggtggaaaagtggtattt 4846001  T
183 ttctgatcaagaagtgtctccccaaattgct-aaaagaaagtatatattttggtat 237  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
4846002 ttctgatcaagaagtgtctccccaaattgctaaaaagaaagtatatattttggtat 4846057  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 3835743 - 3835801
Alignment:
62 ctgatatgaatcatatcagaggtgacagaacaaattgaatttgataaacacaagagatg 120  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||    
3835743 ctgatataaatcatatcagaggtgacagaacaacttgaatttgataaacacaagagatg 3835801  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 120
Target Start/End: Complemental strand, 19973715 - 19973657
Alignment:
62 ctgatatgaatcatatcagaggtgacagaacaaattgaatttgataaacacaagagatg 120  Q
    ||||||||||||| ||||||||||||||||||| | |||||||||||||||| ||||||    
19973715 ctgatatgaatcaaatcagaggtgacagaacaactcgaatttgataaacacaggagatg 19973657  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 14579700 - 14579607
Alignment:
19 atccgcctcataaacgaatattctcccaggatataacag----ttccctgatatgaatcatatcagaggtgacagaacaaattgaatttgataa 108  Q
    ||||||||||||| ||||||| ||| ||||||| |||||    ||| |||| ||||||||| | |||||||||||||||| |||||||||||||    
14579700 atccgcctcataagcgaatatcctctcaggatacaacaggttcttctctgacatgaatcatgtaagaggtgacagaacaacttgaatttgataa 14579607  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 120
Target Start/End: Complemental strand, 19976133 - 19976075
Alignment:
62 ctgatatgaatcatatcagaggtgacagaacaaattgaatttgataaacacaagagatg 120  Q
    |||||||||||||||| | |||||||||||||| | ||||||||||| |||| ||||||    
19976133 ctgatatgaatcatattaaaggtgacagaacaactcgaatttgataaccacaggagatg 19976075  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 19697882 - 19697961
Alignment:
19 atccgcctcataaacgaatattctcccaggatataacag---ttccctgatatgaatcat-atcagaggtgacagaacaa 94  Q
    ||||||||||||| || |||| ||||||||||| |||||   ||||| | |||||||||| ||| |||||||||||||||    
19697882 atccgcctcataagcgcatatcctcccaggatacaacagttcttccccgttatgaatcataatcggaggtgacagaacaa 19697961  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 24045020 - 24045064
Alignment:
76 atcagaggtgacagaacaaattgaatttgataaacacaagagatg 120  Q
    ||||||||||||||||||| || ||| ||||||||||| ||||||    
24045020 atcagaggtgacagaacaacttaaatatgataaacacaggagatg 24045064  T

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Target: scaffold0076 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 58 - 243
Target Start/End: Original strand, 6839 - 7013
Alignment:
58 ttccctgatatgaatcatatcagaggtgacagaacaaattgaatttgataaacacaagagatgtaatccaggaagaaatattgggaagaaagaaagagtt 157  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||| ||| ||||||| |             |||||||    
6839 ttccctgatatgaatcatatcagagatgacagaacaacttgaatttgataaacacaggagatgtaacccacgaagaaaaa-------------aagagtt 6925  T
158 tttgtgttggtggaaaagtggta-ttttctgatcaagaagtgtctccccaaattgct-aaaagaaagtatatattttggtatgcttct 243  Q
    ||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
6926 tttatgttggtggaaaagtggtatttttctgatcaagaagtgtctctccaaattgctaaaaagaaagtatatattttggtatgcttct 7013  T

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Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 125 - 243
Target Start/End: Original strand, 9111649 - 9111767
Alignment:
125 ccaggaagaaatattgggaagaaagaaagagtttttgtgttggtggaaaagtggtattttctgatcaagaagtgtctccccaaattgctaaaagaaagta 224  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||   |||||||||||    
9111649 ccaggaagaaaaattgggaagaaagaaagagtttttgtgttggtggaaaagtggtattttctgatcaagaagtgt-ttcccaaattctaaaaagaaagta 9111747  T
225 tatatttt-ggtatgcttct 243  Q
    |||||||| |||||||||||    
9111748 tatattttgggtatgcttct 9111767  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 140
Target Start/End: Original strand, 21501345 - 21501419
Alignment:
65 atatgaatcatatcagaggtgacagaacaaattgaatttgataaacacaagagatgtaatccaggaagaaatattg 140  Q
    |||| ||||||||||||| ||| ||||||| ||||||||  |||||||||||||| ||| ||||||| ||||||||    
21501345 atatcaatcatatcagagatgatagaacaacttgaattttctaaacacaagagatataacccaggaa-aaatattg 21501419  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 43254193 - 43254110
Alignment:
22 cgcctcataaacgaatattctcccaggatataacag----ttccctgatatgaatcatatcagaggtgacagaacaaattgaat 101  Q
    |||||||||| || |||| ||||||||||| ||||     |||||  |||||||||||||||||||||||||||||| ||||||    
43254193 cgcctcataagcgcatatcctcccaggatacaacatgttcttcccatatatgaatcatatcagaggtgacagaacaacttgaat 43254110  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 1953764 - 1953689
Alignment:
23 gcctcataaacgaatattctcccaggatataacag---ttccctgatatgaatcatatc-agaggtgacagaacaa 94  Q
    ||||||||| ||||||| ||||||||||| |||||   ||||||| ||||||||||| |  |||||||||||||||    
1953764 gcctcataagcgaatatcctcccaggatacaacagttcttccctgttatgaatcataacgggaggtgacagaacaa 1953689  T

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Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 127 - 241
Target Start/End: Original strand, 41739972 - 41740090
Alignment:
127 aggaagaaatattgggaagaaagaaagagtttttgtgttggtggaaaagtggta-ttttctgatcaagaagtgtctccccaaattgcta--aaagaaagt 223  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| | |||||||||||  | |||||||    
41739972 aggaagaaaaattgagaagaaagaaagagtttttgtgttggtggaaaagtggtatttttctgatcaggaagtgtcactccaaattgctatgagagaaagt 41740071  T
224 atata-ttttggtatgctt 241  Q
    ||||| |||||||||||||    
41740072 atatatttttggtatgctt 41740090  T

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Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 158
Target Start/End: Complemental strand, 895523 - 895382
Alignment:
19 atccgcctcataaacgaatattctcccaggatataacagttc---cctgatatgaatcatatcagaggtgacagaacaaattgaatttgataaacacaag 115  Q
    ||||||||||||| || |||| ||||||||||| || |||||   ||| |||||||||||||||||||||| ||||||| |||||||| ||||||||| |    
895523 atccgcctcataagcgcatatcctcccaggatacaaaagttcttccctaatatgaatcatatcagaggtgatagaacaagttgaatttaataaacacagg 895424  T
116 agatgtaatccaggaagaaatattgggaagaaagaaagagttt 158  Q
    ||| |||| | ||||||||| ||||||||||||||||| ||||    
895423 agaagtaa-ctaggaagaaaaattgggaagaaagaaagtgttt 895382  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 31767527 - 31767570
Alignment:
58 ttccctgatatgaatcatatcagaggtgacagaacaaattgaat 101  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||    
31767527 ttccctgatatgaatcacatcagaggtgacagaacaacttgaat 31767570  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 56 - 158
Target Start/End: Original strand, 16366443 - 16366540
Alignment:
56 agttccctgatatgaatcatatcagaggtgacagaacaaattgaatttgataaacacaagagatgtaatccaggaagaaatattgggaagaaagaaagag 155  Q
    |||||||| ||||||||||||||| |||||||||||||| | ||||   ||| ||||| |||||||||  |||||||||| |||||||||||||||||||    
16366443 agttccctaatatgaatcatatcaaaggtgacagaacaactcgaat---atatacacaggagatgtaa--caggaagaaaaattgggaagaaagaaagag 16366537  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 2353277 - 2353181
Alignment:
19 atccgcctcataaacgaatattctcccaggatataacag----ttccctgatatgaatcatatcagaggtgacagaacaaattgaatttgataaaca 111  Q
    |||||||||||||  |  ||| ||||||||||| |||||    ||| |||||||||||||||| |||||||||||||||| ||||||||||||||||    
2353277 atccgcctcataagtgcttatcctcccaggatacaacaggttcttctctgatatgaatcatataagaggtgacagaacaacttgaatttgataaaca 2353181  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 58 - 140
Target Start/End: Original strand, 26445173 - 26445255
Alignment:
58 ttccctgatatgaatcatatcagaggtgacagaacaaattgaatttgataaacacaagagatgtaatccaggaagaaatattg 140  Q
    |||||||||||||||||||||||||| |||| ||||| ||||||||| |||||||| ||||| |||  || ||| ||||||||    
26445173 ttccctgatatgaatcatatcagaggcgacataacaatttgaatttgctaaacacaggagatataacacaagaaaaaatattg 26445255  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 9372292 - 9372346
Alignment:
59 tccctgatatgaatcatatcagaggtgacagaacaaattgaatttgataaacaca 113  Q
    ||||||||||||||||||| |||||||||| | ||| || |||||||||||||||    
9372292 tccctgatatgaatcatatgagaggtgacaaagcaacttaaatttgataaacaca 9372346  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 113
Target Start/End: Complemental strand, 14654907 - 14654856
Alignment:
62 ctgatatgaatcatatcagaggtgacagaacaaattgaatttgataaacaca 113  Q
    |||| ||||||||| |||||||||||||||||| ||||| ||||||| ||||    
14654907 ctgacatgaatcatgtcagaggtgacagaacaacttgaagttgataatcaca 14654856  T

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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 13292034 - 13291940
Alignment:
19 atccgcctcataaacgaatattctcccaggatataacag----ttccctgatatgaatcatatcagaggtgacagaacaaattgaatttgataaa 109  Q
    ||||||||||||| || |||| ||||||||||| |||||    ||| ||||||||||||||||||||||||| ||||||| | ||||||||||||    
13292034 atccgcctcataagcgcatatcctcccaggatacaacaggttattctctgatatgaatcatatcagaggtgatagaacaactcgaatttgataaa 13291940  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 127
Target Start/End: Complemental strand, 16819638 - 16819573
Alignment:
62 ctgatatgaatcatatcagaggtgacagaacaaattgaatttgataaacacaagagatgtaatcca 127  Q
    |||||||||||||| | |||||||||| ||||| |||||| ||||||||||| || |||| |||||    
16819638 ctgatatgaatcatgttagaggtgacaaaacaatttgaatctgataaacacatgaaatgttatcca 16819573  T

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Target: scaffold0002 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 120
Target Start/End: Complemental strand, 448795 - 448697
Alignment:
23 gcctcataaacgaatattctcccaggatataaca-gttccctgatatgaatcatatcagaggtgacagaacaaattgaatttgataaacacaagagatg 120  Q
    ||||||||| || |||| ||| | ||||| |||| ||||||| ||||||||||||||| |||||||| ||||| |||||| ||||||||||| ||||||    
448795 gcctcataatcgcatatcctctcgggatacaacatgttccctaatatgaatcatatcaaaggtgacaaaacaacttgaatctgataaacacaggagatg 448697  T

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Target: scaffold0028 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 110201 - 110123
Alignment:
19 atccgcctcataaacgaatattctcccaggatataacagttcc---ctgatatgaatcatatcagaggtgacagaacaa 94  Q
    |||||||||||||||| |||| |||||| |||| ||||||||    |||||||||||||| ||||||||||||||||||    
110201 atccgcctcataaacgcatatcctcccaagatacaacagttcttcgctgatatgaatcatgtcagaggtgacagaacaa 110123  T

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Target: scaffold0028; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 127780 - 127702
Alignment:
19 atccgcctcataaacgaatattctcccaggatataacagttc---cctgatatgaatcatatcagaggtgacagaacaa 94  Q
    |||||||||| ||||| |||| |||||| |||| ||||||||   ||||||||||||||| ||||||||||||||||||    
127780 atccgcctcagaaacgcatatcctcccatgatacaacagttcttccctgatatgaatcatgtcagaggtgacagaacaa 127702  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 15569647 - 15569550
Alignment:
19 atccgcctcataaacgaatattctcccaggatataacag----ttccctgatatgaatcatatcagaggtgacagaacaaattgaatttgataaacac 112  Q
    ||||||||||||| |  |||| ||||||||||| |||||    ||| ||||||||||||||||||||||||||||||||| | |||| || |||||||    
15569647 atccgcctcataagcacatatcctcccaggatacaacaggttcttctctgatatgaatcatatcagaggtgacagaacaactcgaatctgttaaacac 15569550  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 58 - 120
Target Start/End: Complemental strand, 13815776 - 13815714
Alignment:
58 ttccctgatatgaatcatatcagaggtgacagaacaaattgaatttgataaacacaagagatg 120  Q
    |||||| || ||||||| ||||||||||||||||||  |||||| ||||||||||||||||||    
13815776 ttccctaatgtgaatcacatcagaggtgacagaacagcttgaatctgataaacacaagagatg 13815714  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 2609685 - 2609735
Alignment:
62 ctgatatgaatcatatcagaggtgacagaacaaattgaatttgataaacac 112  Q
    |||||||||||||||||||| |||||||||||| | ||||||| |||||||    
2609685 ctgatatgaatcatatcagatgtgacagaacaactcgaatttgttaaacac 2609735  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 108
Target Start/End: Complemental strand, 15170012 - 15169923
Alignment:
23 gcctcataaacgaatattctcccaggatataacag----ttccctgatatgaatcatatcagaggtgacagaacaaattgaatttgataa 108  Q
    |||||||||||| |||| ||| ||||||| |||||    ||| || | ||||||||| |||||| ||||||||||| |||||||||||||    
15170012 gcctcataaacgcatatcctcacaggatacaacaggttcttctctaacatgaatcatgtcagagatgacagaacaacttgaatttgataa 15169923  T

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Target: scaffold0216 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 119
Target Start/End: Complemental strand, 12151 - 12090
Alignment:
58 ttccctgatatgaatcatatcagaggtgacagaacaaattgaatttgataaacacaagagat 119  Q
    |||||| |||||||||||||||||||||||||||||| |  ||| ||||||||||| |||||    
12151 ttcccttatatgaatcatatcagaggtgacagaacaactccaatctgataaacacatgagat 12090  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 120
Target Start/End: Complemental strand, 27107341 - 27107279
Alignment:
58 ttccctgatatgaatcatatcagaggtgacagaacaaattgaatttgataaacacaagagatg 120  Q
    ||||||||| | ||||| ||||||||||||||||||  |||||| ||||||||||| ||||||    
27107341 ttccctgatgtaaatcacatcagaggtgacagaacagcttgaatctgataaacacaggagatg 27107279  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 8424480 - 8424432
Alignment:
62 ctgatatgaatcatatcagaggtgacagaacaaattgaatttgataaac 110  Q
    |||||||||||||||  |||| ||||||||||| || ||||||||||||    
8424480 ctgatatgaatcatactagagatgacagaacaacttaaatttgataaac 8424432  T

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