View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9338_low_8 (Length: 243)
Name: NF9338_low_8
Description: NF9338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9338_low_8 |
 |  |
|
| [»] scaffold0076 (1 HSPs) |
 |  |
|
| [»] chr1 (4 HSPs) |
 |  |
|
| [»] scaffold0002 (1 HSPs) |
 |  |  |
|
| [»] scaffold0028 (2 HSPs) |
 |  |  |
|
| [»] scaffold0216 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr6 (Bit Score: 116; Significance: 4e-59; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 84 - 237
Target Start/End: Original strand, 4845902 - 4846057
Alignment:
| Q |
84 |
tgacagaacaaattgaatttgataaacacaagagatgtaatccaggaagaaatattgggaagaaagaaagagtttttgtgttggtggaaaagtggta-tt |
182 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
4845902 |
tgacagaacaacttgaatttgataaacacgggagatgtaacccaggaagaaaaattgggaagaaagaaagagcttttgtgttggtggaaaagtggtattt |
4846001 |
T |
 |
| Q |
183 |
ttctgatcaagaagtgtctccccaaattgct-aaaagaaagtatatattttggtat |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4846002 |
ttctgatcaagaagtgtctccccaaattgctaaaaagaaagtatatattttggtat |
4846057 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 3835743 - 3835801
Alignment:
| Q |
62 |
ctgatatgaatcatatcagaggtgacagaacaaattgaatttgataaacacaagagatg |
120 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3835743 |
ctgatataaatcatatcagaggtgacagaacaacttgaatttgataaacacaagagatg |
3835801 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 120
Target Start/End: Complemental strand, 19973715 - 19973657
Alignment:
| Q |
62 |
ctgatatgaatcatatcagaggtgacagaacaaattgaatttgataaacacaagagatg |
120 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| | |||||||||||||||| |||||| |
|
|
| T |
19973715 |
ctgatatgaatcaaatcagaggtgacagaacaactcgaatttgataaacacaggagatg |
19973657 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 14579700 - 14579607
Alignment:
| Q |
19 |
atccgcctcataaacgaatattctcccaggatataacag----ttccctgatatgaatcatatcagaggtgacagaacaaattgaatttgataa |
108 |
Q |
| |
|
||||||||||||| ||||||| ||| ||||||| ||||| ||| |||| ||||||||| | |||||||||||||||| ||||||||||||| |
|
|
| T |
14579700 |
atccgcctcataagcgaatatcctctcaggatacaacaggttcttctctgacatgaatcatgtaagaggtgacagaacaacttgaatttgataa |
14579607 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 120
Target Start/End: Complemental strand, 19976133 - 19976075
Alignment:
| Q |
62 |
ctgatatgaatcatatcagaggtgacagaacaaattgaatttgataaacacaagagatg |
120 |
Q |
| |
|
|||||||||||||||| | |||||||||||||| | ||||||||||| |||| |||||| |
|
|
| T |
19976133 |
ctgatatgaatcatattaaaggtgacagaacaactcgaatttgataaccacaggagatg |
19976075 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 19697882 - 19697961
Alignment:
| Q |
19 |
atccgcctcataaacgaatattctcccaggatataacag---ttccctgatatgaatcat-atcagaggtgacagaacaa |
94 |
Q |
| |
|
||||||||||||| || |||| ||||||||||| ||||| ||||| | |||||||||| ||| ||||||||||||||| |
|
|
| T |
19697882 |
atccgcctcataagcgcatatcctcccaggatacaacagttcttccccgttatgaatcataatcggaggtgacagaacaa |
19697961 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 24045020 - 24045064
Alignment:
| Q |
76 |
atcagaggtgacagaacaaattgaatttgataaacacaagagatg |
120 |
Q |
| |
|
||||||||||||||||||| || ||| ||||||||||| |||||| |
|
|
| T |
24045020 |
atcagaggtgacagaacaacttaaatatgataaacacaggagatg |
24045064 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 58 - 243
Target Start/End: Original strand, 6839 - 7013
Alignment:
| Q |
58 |
ttccctgatatgaatcatatcagaggtgacagaacaaattgaatttgataaacacaagagatgtaatccaggaagaaatattgggaagaaagaaagagtt |
157 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||| ||| ||||||| | ||||||| |
|
|
| T |
6839 |
ttccctgatatgaatcatatcagagatgacagaacaacttgaatttgataaacacaggagatgtaacccacgaagaaaaa-------------aagagtt |
6925 |
T |
 |
| Q |
158 |
tttgtgttggtggaaaagtggta-ttttctgatcaagaagtgtctccccaaattgct-aaaagaaagtatatattttggtatgcttct |
243 |
Q |
| |
|
||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6926 |
tttatgttggtggaaaagtggtatttttctgatcaagaagtgtctctccaaattgctaaaaagaaagtatatattttggtatgcttct |
7013 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 125 - 243
Target Start/End: Original strand, 9111649 - 9111767
Alignment:
| Q |
125 |
ccaggaagaaatattgggaagaaagaaagagtttttgtgttggtggaaaagtggtattttctgatcaagaagtgtctccccaaattgctaaaagaaagta |
224 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||| |
|
|
| T |
9111649 |
ccaggaagaaaaattgggaagaaagaaagagtttttgtgttggtggaaaagtggtattttctgatcaagaagtgt-ttcccaaattctaaaaagaaagta |
9111747 |
T |
 |
| Q |
225 |
tatatttt-ggtatgcttct |
243 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
9111748 |
tatattttgggtatgcttct |
9111767 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 140
Target Start/End: Original strand, 21501345 - 21501419
Alignment:
| Q |
65 |
atatgaatcatatcagaggtgacagaacaaattgaatttgataaacacaagagatgtaatccaggaagaaatattg |
140 |
Q |
| |
|
|||| ||||||||||||| ||| ||||||| |||||||| |||||||||||||| ||| ||||||| |||||||| |
|
|
| T |
21501345 |
atatcaatcatatcagagatgatagaacaacttgaattttctaaacacaagagatataacccaggaa-aaatattg |
21501419 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 43254193 - 43254110
Alignment:
| Q |
22 |
cgcctcataaacgaatattctcccaggatataacag----ttccctgatatgaatcatatcagaggtgacagaacaaattgaat |
101 |
Q |
| |
|
|||||||||| || |||| ||||||||||| |||| ||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
43254193 |
cgcctcataagcgcatatcctcccaggatacaacatgttcttcccatatatgaatcatatcagaggtgacagaacaacttgaat |
43254110 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 1953764 - 1953689
Alignment:
| Q |
23 |
gcctcataaacgaatattctcccaggatataacag---ttccctgatatgaatcatatc-agaggtgacagaacaa |
94 |
Q |
| |
|
||||||||| ||||||| ||||||||||| ||||| ||||||| ||||||||||| | ||||||||||||||| |
|
|
| T |
1953764 |
gcctcataagcgaatatcctcccaggatacaacagttcttccctgttatgaatcataacgggaggtgacagaacaa |
1953689 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 127 - 241
Target Start/End: Original strand, 41739972 - 41740090
Alignment:
| Q |
127 |
aggaagaaatattgggaagaaagaaagagtttttgtgttggtggaaaagtggta-ttttctgatcaagaagtgtctccccaaattgcta--aaagaaagt |
223 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| | ||||||||||| | ||||||| |
|
|
| T |
41739972 |
aggaagaaaaattgagaagaaagaaagagtttttgtgttggtggaaaagtggtatttttctgatcaggaagtgtcactccaaattgctatgagagaaagt |
41740071 |
T |
 |
| Q |
224 |
atata-ttttggtatgctt |
241 |
Q |
| |
|
||||| ||||||||||||| |
|
|
| T |
41740072 |
atatatttttggtatgctt |
41740090 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 158
Target Start/End: Complemental strand, 895523 - 895382
Alignment:
| Q |
19 |
atccgcctcataaacgaatattctcccaggatataacagttc---cctgatatgaatcatatcagaggtgacagaacaaattgaatttgataaacacaag |
115 |
Q |
| |
|
||||||||||||| || |||| ||||||||||| || ||||| ||| |||||||||||||||||||||| ||||||| |||||||| ||||||||| | |
|
|
| T |
895523 |
atccgcctcataagcgcatatcctcccaggatacaaaagttcttccctaatatgaatcatatcagaggtgatagaacaagttgaatttaataaacacagg |
895424 |
T |
 |
| Q |
116 |
agatgtaatccaggaagaaatattgggaagaaagaaagagttt |
158 |
Q |
| |
|
||| |||| | ||||||||| ||||||||||||||||| |||| |
|
|
| T |
895423 |
agaagtaa-ctaggaagaaaaattgggaagaaagaaagtgttt |
895382 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 31767527 - 31767570
Alignment:
| Q |
58 |
ttccctgatatgaatcatatcagaggtgacagaacaaattgaat |
101 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
31767527 |
ttccctgatatgaatcacatcagaggtgacagaacaacttgaat |
31767570 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 56 - 158
Target Start/End: Original strand, 16366443 - 16366540
Alignment:
| Q |
56 |
agttccctgatatgaatcatatcagaggtgacagaacaaattgaatttgataaacacaagagatgtaatccaggaagaaatattgggaagaaagaaagag |
155 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||||| | |||| ||| ||||| ||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
16366443 |
agttccctaatatgaatcatatcaaaggtgacagaacaactcgaat---atatacacaggagatgtaa--caggaagaaaaattgggaagaaagaaagag |
16366537 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 2353277 - 2353181
Alignment:
| Q |
19 |
atccgcctcataaacgaatattctcccaggatataacag----ttccctgatatgaatcatatcagaggtgacagaacaaattgaatttgataaaca |
111 |
Q |
| |
|
||||||||||||| | ||| ||||||||||| ||||| ||| |||||||||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
2353277 |
atccgcctcataagtgcttatcctcccaggatacaacaggttcttctctgatatgaatcatataagaggtgacagaacaacttgaatttgataaaca |
2353181 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 58 - 140
Target Start/End: Original strand, 26445173 - 26445255
Alignment:
| Q |
58 |
ttccctgatatgaatcatatcagaggtgacagaacaaattgaatttgataaacacaagagatgtaatccaggaagaaatattg |
140 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||| ||||||||| |||||||| ||||| ||| || ||| |||||||| |
|
|
| T |
26445173 |
ttccctgatatgaatcatatcagaggcgacataacaatttgaatttgctaaacacaggagatataacacaagaaaaaatattg |
26445255 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 9372292 - 9372346
Alignment:
| Q |
59 |
tccctgatatgaatcatatcagaggtgacagaacaaattgaatttgataaacaca |
113 |
Q |
| |
|
||||||||||||||||||| |||||||||| | ||| || ||||||||||||||| |
|
|
| T |
9372292 |
tccctgatatgaatcatatgagaggtgacaaagcaacttaaatttgataaacaca |
9372346 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 113
Target Start/End: Complemental strand, 14654907 - 14654856
Alignment:
| Q |
62 |
ctgatatgaatcatatcagaggtgacagaacaaattgaatttgataaacaca |
113 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||| ||||| ||||||| |||| |
|
|
| T |
14654907 |
ctgacatgaatcatgtcagaggtgacagaacaacttgaagttgataatcaca |
14654856 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 13292034 - 13291940
Alignment:
| Q |
19 |
atccgcctcataaacgaatattctcccaggatataacag----ttccctgatatgaatcatatcagaggtgacagaacaaattgaatttgataaa |
109 |
Q |
| |
|
||||||||||||| || |||| ||||||||||| ||||| ||| ||||||||||||||||||||||||| ||||||| | |||||||||||| |
|
|
| T |
13292034 |
atccgcctcataagcgcatatcctcccaggatacaacaggttattctctgatatgaatcatatcagaggtgatagaacaactcgaatttgataaa |
13291940 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 127
Target Start/End: Complemental strand, 16819638 - 16819573
Alignment:
| Q |
62 |
ctgatatgaatcatatcagaggtgacagaacaaattgaatttgataaacacaagagatgtaatcca |
127 |
Q |
| |
|
|||||||||||||| | |||||||||| ||||| |||||| ||||||||||| || |||| ||||| |
|
|
| T |
16819638 |
ctgatatgaatcatgttagaggtgacaaaacaatttgaatctgataaacacatgaaatgttatcca |
16819573 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 120
Target Start/End: Complemental strand, 448795 - 448697
Alignment:
| Q |
23 |
gcctcataaacgaatattctcccaggatataaca-gttccctgatatgaatcatatcagaggtgacagaacaaattgaatttgataaacacaagagatg |
120 |
Q |
| |
|
||||||||| || |||| ||| | ||||| |||| ||||||| ||||||||||||||| |||||||| ||||| |||||| ||||||||||| |||||| |
|
|
| T |
448795 |
gcctcataatcgcatatcctctcgggatacaacatgttccctaatatgaatcatatcaaaggtgacaaaacaacttgaatctgataaacacaggagatg |
448697 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 110201 - 110123
Alignment:
| Q |
19 |
atccgcctcataaacgaatattctcccaggatataacagttcc---ctgatatgaatcatatcagaggtgacagaacaa |
94 |
Q |
| |
|
|||||||||||||||| |||| |||||| |||| |||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
110201 |
atccgcctcataaacgcatatcctcccaagatacaacagttcttcgctgatatgaatcatgtcagaggtgacagaacaa |
110123 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 127780 - 127702
Alignment:
| Q |
19 |
atccgcctcataaacgaatattctcccaggatataacagttc---cctgatatgaatcatatcagaggtgacagaacaa |
94 |
Q |
| |
|
|||||||||| ||||| |||| |||||| |||| |||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
127780 |
atccgcctcagaaacgcatatcctcccatgatacaacagttcttccctgatatgaatcatgtcagaggtgacagaacaa |
127702 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 15569647 - 15569550
Alignment:
| Q |
19 |
atccgcctcataaacgaatattctcccaggatataacag----ttccctgatatgaatcatatcagaggtgacagaacaaattgaatttgataaacac |
112 |
Q |
| |
|
||||||||||||| | |||| ||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||| | |||| || ||||||| |
|
|
| T |
15569647 |
atccgcctcataagcacatatcctcccaggatacaacaggttcttctctgatatgaatcatatcagaggtgacagaacaactcgaatctgttaaacac |
15569550 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 58 - 120
Target Start/End: Complemental strand, 13815776 - 13815714
Alignment:
| Q |
58 |
ttccctgatatgaatcatatcagaggtgacagaacaaattgaatttgataaacacaagagatg |
120 |
Q |
| |
|
|||||| || ||||||| |||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
13815776 |
ttccctaatgtgaatcacatcagaggtgacagaacagcttgaatctgataaacacaagagatg |
13815714 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 2609685 - 2609735
Alignment:
| Q |
62 |
ctgatatgaatcatatcagaggtgacagaacaaattgaatttgataaacac |
112 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| | ||||||| ||||||| |
|
|
| T |
2609685 |
ctgatatgaatcatatcagatgtgacagaacaactcgaatttgttaaacac |
2609735 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 108
Target Start/End: Complemental strand, 15170012 - 15169923
Alignment:
| Q |
23 |
gcctcataaacgaatattctcccaggatataacag----ttccctgatatgaatcatatcagaggtgacagaacaaattgaatttgataa |
108 |
Q |
| |
|
|||||||||||| |||| ||| ||||||| ||||| ||| || | ||||||||| |||||| ||||||||||| ||||||||||||| |
|
|
| T |
15170012 |
gcctcataaacgcatatcctcacaggatacaacaggttcttctctaacatgaatcatgtcagagatgacagaacaacttgaatttgataa |
15169923 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0216 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0216
Description:
Target: scaffold0216; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 119
Target Start/End: Complemental strand, 12151 - 12090
Alignment:
| Q |
58 |
ttccctgatatgaatcatatcagaggtgacagaacaaattgaatttgataaacacaagagat |
119 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| | ||| ||||||||||| ||||| |
|
|
| T |
12151 |
ttcccttatatgaatcatatcagaggtgacagaacaactccaatctgataaacacatgagat |
12090 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 120
Target Start/End: Complemental strand, 27107341 - 27107279
Alignment:
| Q |
58 |
ttccctgatatgaatcatatcagaggtgacagaacaaattgaatttgataaacacaagagatg |
120 |
Q |
| |
|
||||||||| | ||||| |||||||||||||||||| |||||| ||||||||||| |||||| |
|
|
| T |
27107341 |
ttccctgatgtaaatcacatcagaggtgacagaacagcttgaatctgataaacacaggagatg |
27107279 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 8424480 - 8424432
Alignment:
| Q |
62 |
ctgatatgaatcatatcagaggtgacagaacaaattgaatttgataaac |
110 |
Q |
| |
|
||||||||||||||| |||| ||||||||||| || |||||||||||| |
|
|
| T |
8424480 |
ctgatatgaatcatactagagatgacagaacaacttaaatttgataaac |
8424432 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University