View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9339_low_11 (Length: 227)
Name: NF9339_low_11
Description: NF9339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9339_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 20 - 114
Target Start/End: Original strand, 15378549 - 15378643
Alignment:
| Q |
20 |
gtttaaccatatactcaactaaattaaccataattttatatctaatttaattggtgggtcgcggagtacatggaaaattgagtttccatgaaaac |
114 |
Q |
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| T |
15378549 |
gtttaaccatatactcaactaaattaaccataattttatatctaatttaattggtgggtcgcggagtacatggaaaattgagtttccatgaaaac |
15378643 |
T |
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Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 156 - 213
Target Start/End: Original strand, 15378685 - 15378742
Alignment:
| Q |
156 |
cgacaggattcactgtacttacttatttacgtctagttctataagtatccagaattat |
213 |
Q |
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| T |
15378685 |
cgacaggattcaccgtacttacttatttacgtcttgttctataagtatccagaattat |
15378742 |
T |
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