View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9339_low_12 (Length: 202)
Name: NF9339_low_12
Description: NF9339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9339_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 7e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 38278378 - 38278544
Alignment:
| Q |
18 |
agttagtccagtacttgctatatatggtgcactatagatatatggtaccctatcaaatagtgtcttatacgccatatttgaccccatctctcatatgcta |
117 |
Q |
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| T |
38278378 |
agttagtccagtacttgctatatatggtgcactatagatatatggtaccctatcaaatagtgtcttatacgccatatttgaccccatctctcatatgcta |
38278477 |
T |
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| Q |
118 |
ctattaattaaaatcggttgcaatgcccataataaaattataatcgtgtgatttttcttgtttaaac |
184 |
Q |
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| T |
38278478 |
ctattaattaaaatcggttgcaatgcccataataaaattatagttgtgtgatttttcttgtttaaac |
38278544 |
T |
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Target: chr1; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 38279355 - 38279489
Alignment:
| Q |
18 |
agttagtccagtacttgctatatatggtgcactatagatatatggtaccctatcaaata-gtgtc-ttatacgccatatttgaccccatctctcatatgc |
115 |
Q |
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| T |
38279355 |
agttagttcagtacttgctatatatggtgccctatcaatctatggtgccctatcaaatatctttctttatacgccaaatttgaccccatctctcatatgc |
38279454 |
T |
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| Q |
116 |
tactattaattaaa-atcggttgcaatgcccataa |
149 |
Q |
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| T |
38279455 |
tacaattagttaaagatcggttgcaatgcccataa |
38279489 |
T |
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