View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9339_low_3 (Length: 343)
Name: NF9339_low_3
Description: NF9339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9339_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 67 - 328
Target Start/End: Complemental strand, 10010205 - 10009945
Alignment:
| Q |
67 |
aaaatatcacatctcatatctgtaaaataatgcagcaagggagttggtcaggatgttactttactatttaaaggactttttaaagttttgtgccgctttt |
166 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10010205 |
aaaatatcacatctcatatctgtaaaataatgcagcaagggagttggtcaggatgttactttactatttaaaggactttttaaagttttgtgccgctttt |
10010106 |
T |
|
| Q |
167 |
ttacgttgtcatggggcttattcaattgcagaaattagctctttatgggcttatggcaagggttgaaaggcatgttataggagtagtgaagctttgcctc |
266 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10010105 |
ttacgttgtcatggggctgattcaattgcagaaattagctctgtatgggcttatggcaagggttgaaaggcatgttataggagtagtgaagctttgcctc |
10010006 |
T |
|
| Q |
267 |
aaatatcattaatggattggtaatgctttgttaaggctatgttgcaggtaaacagtgaataa |
328 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
10010005 |
aaatatcattaatggattggtaatggtttgttaaggctatgttgca-gtaaacagtgaataa |
10009945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 86 - 310
Target Start/End: Original strand, 47248756 - 47248980
Alignment:
| Q |
86 |
ctgtaaaataatgcagcaagggagttggtcaggatgttactttactatttaaaggactttttaaagttttgtgccgcttttttacgttgtcatggggctt |
185 |
Q |
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||||||||| ||||||||| |||||||||||| ||||| ||||||||||||||||| ||||| |||||| ||||||||||||| ||||||||| ||| |
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| T |
47248756 |
ctgtaaaattatgcagcaaaggagttggtcagaatgttgctttactatttaaaggaatttttcaagtttgctgccgcttttttaaattgtcatggagctg |
47248855 |
T |
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| Q |
186 |
attcaattgcagaaattagctctttatgggcttatggcaagggttgaaaggcatgttataggagtagtgaagctttgcctcaaatatcattaatggattg |
285 |
Q |
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| T |
47248856 |
attcagttgtagaaattagctcattatgggcttatggcaagggctgaaaggcatgttctaggagtagtgaagctttgcctcaaatatcatttatggattg |
47248955 |
T |
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| Q |
286 |
gtaatgctttgttaaggctatgttg |
310 |
Q |
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|||||| |||||||||||||||||| |
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| T |
47248956 |
gtaatggtttgttaaggctatgttg |
47248980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 10010238 - 10010206
Alignment:
| Q |
8 |
ttggtgttcttggagtaattttggaatgaagac |
40 |
Q |
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| T |
10010238 |
ttggtgttcttggagtaattttggaatgaagac |
10010206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 136; Significance: 7e-71; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 67 - 298
Target Start/End: Complemental strand, 42310622 - 42310391
Alignment:
| Q |
67 |
aaaatatcacatctcatatctgtaaaataatgcagcaagggagttggtcaggatgttactttactatttaaaggactttttaaagttttgtgccgctttt |
166 |
Q |
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||||||||||| || || ||||||||| ||||||||| |||| ||||||| ||||||||||||||||||||||| ||||| |||||| ||||||||||| |
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| T |
42310622 |
aaaatatcacaacttctacctgtaaaattatgcagcaaaggaggtggtcagaatgttactttactatttaaaggaatttttcaagtttggtgccgctttt |
42310523 |
T |
|
| Q |
167 |
ttacgttgtcatggggcttattcaattgcagaaattagctctttatgggcttatggcaagggttgaaaggcatgttataggagtagtgaagctttgcctc |
266 |
Q |
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|||| ||||||||| ||| ||| | |||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||| |||||| |||||||| |
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| T |
42310522 |
ttacattgtcatggagctgattaagttgcagaaattagctcattatgggcttatggcaagggctgaaaggcatgttctaggagtggtgaagttttgcctc |
42310423 |
T |
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| Q |
267 |
aaatatcattaatggattggtaatgctttgtt |
298 |
Q |
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|||||||||| |||||||||||| ||| |||| |
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| T |
42310422 |
aaatatcatttatggattggtaaggctatgtt |
42310391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 266 - 313
Target Start/End: Complemental strand, 12390559 - 12390512
Alignment:
| Q |
266 |
caaatatcattaatggattggtaatgctttgttaaggctatgttgcag |
313 |
Q |
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||||||||||| ||||||||| |||| ||||||||||||||||||||| |
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| T |
12390559 |
caaatatcattgatggattggaaatggtttgttaaggctatgttgcag |
12390512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 328
Target Start/End: Original strand, 40141197 - 40141289
Alignment:
| Q |
234 |
aggcatgttataggagtagtgaagctttgcctcaaatatcattaatggattggtaatgctttgttaaggctatgttgcaggtaaacagtgaataa |
328 |
Q |
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|||| |||| ||||||||||| || ||||| ||||||||||| ||||||||| |||| |||||| ||||||||||| | |||||| |||||||| |
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| T |
40141197 |
aggcgtgttttaggagtagtgtaggtttgca-caaatatcattgatggattggaaatggtttgtttaggctatgttgta-gtaaacggtgaataa |
40141289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 328
Target Start/End: Original strand, 16044344 - 16044426
Alignment:
| Q |
244 |
taggagtagtgaagctttgcctcaaatatcattaatggattggtaatgctttgttaaggctatgttgcaggtaaacagtgaataa |
328 |
Q |
| |
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||||||||||| || ||||| ||||||||| | ||||||||| |||| |||||| ||||||||||||| |||||| |||||||| |
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| T |
16044344 |
taggagtagtgtaggtttgca-caaatatcactgatggattggaaatggtttgttgaggctatgttgca-gtaaacggtgaataa |
16044426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 297
Target Start/End: Complemental strand, 12459923 - 12459841
Alignment:
| Q |
215 |
gcttatggcaagggttgaaaggcatgttataggagtagtgaagctttgcctcaaatatcattaatggattggtaatgctttgt |
297 |
Q |
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|||||| ||||| | ||||||| |||| | |||| |||||||||||| ||||||||||||| ||| ||||| |||| ||||| |
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| T |
12459923 |
gcttatagcaagtgatgaaaggtgtgttcttggagcagtgaagctttgtctcaaatatcattgatgtattggaaatggtttgt |
12459841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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