View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9339_low_4 (Length: 287)

Name: NF9339_low_4
Description: NF9339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9339_low_4
NF9339_low_4
[»] chr5 (15 HSPs)
chr5 (22-259)||(41337137-41337374)
chr5 (30-243)||(31188434-31188647)
chr5 (40-243)||(31178399-31178602)
chr5 (31-243)||(31225166-31225378)
chr5 (60-246)||(41369731-41369918)
chr5 (41-229)||(41332238-41332426)
chr5 (27-152)||(41316335-41316460)
chr5 (27-152)||(41328302-41328427)
chr5 (27-234)||(41324322-41324529)
chr5 (193-247)||(41366400-41366454)
chr5 (101-146)||(41431274-41431319)
chr5 (22-92)||(41286404-41286474)
chr5 (27-152)||(41310595-41310720)
chr5 (22-153)||(41366494-41366622)
chr5 (203-243)||(41286280-41286320)
[»] chr4 (1 HSPs)
chr4 (43-244)||(17249135-17249336)


Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 22 - 259
Target Start/End: Complemental strand, 41337374 - 41337137
Alignment:
Q  22 agggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttcatccttgcttgttttactgtgattgtttctatgatcatt 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41337374 agggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttcatccttgcttgttttactgtgattgtttctatgatcatt 41337275  T
Q  122 gatgatgtcttgcaatatcctatcaatctctccttgtaatctctcaactctggtcttcactctacttaccttttgaagtattttaatagaaggatacaaa 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  41337274 gatgatgtcttgcaatatcctatcaatctctccttgtaatctctcaactctggtcttcactctacttaccttttgaagtattttaatagaaggatacaag 41337175  T
Q  222 tcagcaatacaaaattctcccaataggccctatgcttc 259  Q
    |||||||||||||||||||||||||||||| |||||||    
T  41337174 tcagcaatacaaaattctcccaataggcccaatgcttc 41337137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 30 - 243
Target Start/End: Original strand, 31188434 - 31188647
Alignment:
Q  30 tgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttcatccttgcttgttttactgtgattgtttctatgatcattgatgatgt 129  Q
    ||||||||| ||||||| ||||||| ||||||||||  ||||||||| |||||||||||||||  ||   ||||| ||||| ||||||||  |||||| |    
T  31188434 tgtgagtgatcattttcctgttgaatcttgagaagagtatcaactagatcttcatccttgctttcttccttgtgaatgtttttatgatcaacgatgatat 31188533  T
Q  130 cttgcaatatcctatcaatctctccttgtaatctctcaactctggtcttcactctacttaccttttgaagtattttaatagaaggatacaaatcagcaat 229  Q
    ||||||||||| |||||||||||   || |   | |||||| | |||||| | ||||| |||  |||||  ||||||| ||||||||||| |||||||||    
T  31188534 cttgcaatatcatatcaatctctttatgaagcttttcaactttcgtcttcgccctactcacccattgaaacattttaacagaaggatacacatcagcaat 31188633  T
Q  230 acaaaattctccca 243  Q
    ||||||||||||||    
T  31188634 acaaaattctccca 31188647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 40 - 243
Target Start/End: Original strand, 31178399 - 31178602
Alignment:
Q  40 cattttcatgttgaaccttgagaagaacatcaactaggtcttcatccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatat 139  Q
    ||||||| ||||||| ||||| |||  |||||||||| |||||||||||||||  ||   ||||| ||||| ||||||||| || ||| |||||||||||    
T  31178399 cattttcctgttgaatcttgataagtgcatcaactagatcttcatccttgctttcttccttgtgaatgtttttatgatcatcgacgatatcttgcaatat 31178498  T
Q  140 cctatcaatctctccttgtaatctctcaactctggtcttcactctacttaccttttgaagtattttaatagaaggatacaaatcagcaatacaaaattct 239  Q
    | |||||||||||   || ||  | |||| | |||||||||| | ||| |||  |||||| ||||||||||||||||||| |||||||||||||||| ||    
T  31178499 catatcaatctctttatgaaacttttcaaatttggtcttcaccccactcacccgttgaagcattttaatagaaggatacacatcagcaatacaaaatcct 31178598  T
Q  240 ccca 243  Q
    ||||    
T  31178599 ccca 31178602  T

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Target: chr5; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 31 - 243
Target Start/End: Complemental strand, 31225378 - 31225166
Alignment:
Q  31 gtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttcatccttgcttgttttactgtgattgtttctatgatcattgatgatgtc 130  Q
    |||||||  ||||||| ||||| | ||||||||||  ||||||||| |||||||||||||||  ||   ||||| ||||| ||||||||| |||||| ||    
T  31225378 gtgagtgctcattttcctgttgtatcttgagaagagtatcaactagatcttcatccttgctttcttccttgtgaatgtttttatgatcatcgatgatatc 31225279  T
Q  131 ttgcaatatcctatcaatctctccttgtaatctctcaactctggtcttcactctacttaccttttgaagtattttaatagaaggatacaaatcagcaata 230  Q
    |||||||||| |||||||||||   || |   | |||||| |||||||| | ||||| |||  |||||| ||||| ||||||||||||| |||| |||||    
T  31225278 ttgcaatatcatatcaatctctttatgaagcttttcaactttggtcttcgccctactcacccattgaagcatttttatagaaggatacacatcaacaata 31225179  T
Q  231 caaaattctccca 243  Q
    |||||| ||||||    
T  31225178 caaaatcctccca 31225166  T

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Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 60 - 246
Target Start/End: Complemental strand, 41369918 - 41369731
Alignment:
Q  60 agaagaacatcaactaggtcttcatccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcctatcaatctctcct-tgt 158  Q
    ||||||||||||||||||||||| |||||| ||  ||  || ||||||||| | |||||||||||||| |||||||||||  |||||  |  | || ||     
T  41369918 agaagaacatcaactaggtcttcttccttgatttcttctctatgattgtttttgtgatcattgatgatatcttgcaatataatatcatgcctttctctga 41369819  T
Q  159 aatctctcaactctggtcttcactctacttaccttttgaagtattttaatagaaggatacaaatcagcaatacaaaattctcccaata 246  Q
    | | | || | | |||||||  | ||||||||| ||||||||||||||||||||||||||||||||||||| |||||| || ||||||    
T  41369818 agtttttccattttggtctttgccctacttaccctttgaagtattttaatagaaggatacaaatcagcaatgcaaaatccttccaata 41369731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 41 - 229
Target Start/End: Complemental strand, 41332426 - 41332238
Alignment:
Q  41 attttcatgttgaaccttgagaagaacatcaactaggtcttcatccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatc 140  Q
    |||||| ||||||| ||||||||||||||| ||||| |||||||| ||||||| ||   ||||| || |||| ||||| | |||||||||||||| ||||    
T  41332426 attttcctgttgaatcttgagaagaacatctactagatcttcatcgttgcttgcttccttgtgaatgcttctgtgatcgtcgatgatgtcttgcattatc 41332327  T
Q  141 ctatcaatctctccttgtaatctctcaactctggtcttcactctacttaccttttgaagtattttaatagaaggatacaaatcagcaat 229  Q
     |||||| |||||  || | | | || | | |||||||| | ||||| |    |||||| ||||||||||||||||||||||| |||||    
T  41332326 atatcaagctctctatgaattttttccattttggtcttctccctactcatgcattgaagcattttaatagaaggatacaaatctgcaat 41332238  T

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Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 27 - 152
Target Start/End: Complemental strand, 41316460 - 41316335
Alignment:
Q  27 tgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttcatccttgcttgttttactgtgattgtttctatgatcattgatga 126  Q
    ||||||||||||  |||||| ||||||| ||||||||||||||| ||||| |||||||| ||||||  ||   ||||| || || | ||||| | |||||    
T  41316460 tgttgtgagtgataattttcctgttgaatcttgagaagaacatctactagatcttcatcattgctttcttccttgtgaatgcttttgtgatcgtcgatga 41316361  T
Q  127 tgtcttgcaatatcctatcaatctct 152  Q
    ||||||||||| || |||||| ||||    
T  41316360 tgtcttgcaatgtcatatcaagctct 41316335  T

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Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 152
Target Start/End: Complemental strand, 41328427 - 41328302
Alignment:
Q  27 tgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttcatccttgcttgttttactgtgattgtttctatgatcattgatga 126  Q
    |||| |||||||  |||||| ||||||| ||||||||||||||| ||||| |||||||| ||||||| ||   ||||| |  |||| ||||| | |||||    
T  41328427 tgttctgagtgataattttcctgttgaatcttgagaagaacatctactagatcttcatcattgcttgcttccttgtgaatacttctgtgatcgtcgatga 41328328  T
Q  127 tgtcttgcaatatcctatcaatctct 152  Q
    |||||||   |||| |||||||||||    
T  41328327 tgtcttgtgctatcatatcaatctct 41328302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 234
Target Start/End: Complemental strand, 41324529 - 41324322
Alignment:
Q  27 tgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttcatccttgcttgttttactgtgattgtttctatgatcattgatga 126  Q
    ||||||||||||  |||||| ||||||| ||||||||||||||| ||||| | ||| || |||||   ||   ||||| || || | ||||| | ||| |    
T  41324529 tgttgtgagtgataattttcctgttgaatcttgagaagaacatctactagatattcttcattgctatcttccttgtgaatgcttttgtgatcgtcgataa 41324430  T
Q  127 tgtcttgcaatatcctatcaatctctccttgtaatctctcaactctggtcttcactctacttaccttttgaagtattttaatagaaggatacaaatcagc 226  Q
    |||||||||||||| |||||||||||   || | | | || | | ||| |||| | ||||| ||   |||||| | |||||||||||||||||||||| |    
T  41324429 tgtcttgcaatatcatatcaatctctttgtgaagtttttccattttggccttcgccctactcacgcattgaagcaatttaatagaaggatacaaatcaac 41324330  T
Q  227 aatacaaa 234  Q
    ||||||||    
T  41324329 aatacaaa 41324322  T

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Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 247
Target Start/End: Complemental strand, 41366454 - 41366400
Alignment:
Q  193 tttgaagtattttaatagaaggatacaaatcagcaatacaaaattctcccaatag 247  Q
    ||||||| ||||||||||||||||||||||| |||| | ||||| ||||||||||    
T  41366454 tttgaagaattttaatagaaggatacaaatctgcaaaagaaaatcctcccaatag 41366400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 146
Target Start/End: Complemental strand, 41431319 - 41431274
Alignment:
Q  101 gtgattgtttctatgatcattgatgatgtcttgcaatatcctatca 146  Q
    |||| ||||| ||||||||||||||||||||||||||||| |||||    
T  41431319 gtgactgtttttatgatcattgatgatgtcttgcaatatcgtatca 41431274  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 92
Target Start/End: Complemental strand, 41286474 - 41286404
Alignment:
Q  22 agggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttcatccttgctt 92  Q
    |||| |||| ||||||  || |||| ||||||| ||||||||||||||||| ||| |||||||| ||||||    
T  41286474 agggatgttatgagtgctcactttcctgttgaatcttgagaagaacatcaattagatcttcatctttgctt 41286404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 152
Target Start/End: Complemental strand, 41310720 - 41310595
Alignment:
Q  27 tgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttcatccttgcttgttttactgtgattgtttctatgatcattgatga 126  Q
    |||| |||||||  |||||| |||| || ||||||||||||||| ||||| |||||||| |||||   ||   || || || || | ||||| | |||||    
T  41310720 tgttctgagtgataattttcctgtttaatcttgagaagaacatctactagatcttcatcattgctatcttccttgcgaatgcttttgtgatcgtcgatga 41310621  T
Q  127 tgtcttgcaatatcctatcaatctct 152  Q
    |||||||||||||| ||| |||||||    
T  41310620 tgtcttgcaatatcatataaatctct 41310595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 153
Target Start/End: Complemental strand, 41366622 - 41366494
Alignment:
Q  22 agggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatcaactaggtcttcatccttgcttgttttactgtgattgtttctatgatcatt 121  Q
    |||| ||||||||||||   ||| || |||||| ||||||||||||||| ||||| || |||| ||| || | |||  ||||| |  || | |||||||     
T  41366622 agggatgttgtgagtga---tttacacgttgaatcttgagaagaacatctactagatcatcattcttcctagctttcttgtgactacttttgtgatcatc 41366526  T
Q  122 gatgatgtcttgcaatatcctatcaatctctc 153  Q
    |||||| |||||||||||| ||||| ||||||    
T  41366525 gatgatctcttgcaatatcatatcagtctctc 41366494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 41286320 - 41286280
Alignment:
Q  203 tttaatagaaggatacaaatcagcaatacaaaattctccca 243  Q
    |||||||||||||||||||||| |||| |||||| ||||||    
T  41286320 tttaatagaaggatacaaatcaacaatgcaaaatcctccca 41286280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 43 - 244
Target Start/End: Original strand, 17249135 - 17249336
Alignment:
Q  43 tttcatgttgaaccttgagaagaacatcaactaggtcttcatccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatcct 142  Q
    |||| ||||||| ||||| |||| |||||||||| ||||||||||||| || |||  | ||    ||||| |||||||  ||||| |||||||||||| |    
T  17249135 tttcttgttgaatcttgataagagcatcaactagatcttcatccttgcgtgctttgttttgtccatttctgtgatcatctatgatatcttgcaatatcat 17249234  T
Q  143 atcaatctctccttgtaatctctcaactctggtcttcactctacttaccttttgaagtattttaatagaaggatacaaatcagcaatacaaaattctccc 242  Q
    |||||| || |  || | | | || | | |||| |||||   ||||||| ||| ||||||||| |||||||||||||||||| ||||||||||| |||||    
T  17249235 atcaatttccctatgaagtttttccattttggttttcacctgacttacccttttaagtattttgatagaaggatacaaatcaacaatacaaaatcctccc 17249334  T
Q  243 aa 244  Q
    ||    
T  17249335 aa 17249336  T

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