View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9339_low_9 (Length: 242)
Name: NF9339_low_9
Description: NF9339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9339_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 10009969 - 10009747
Alignment:
| Q |
1 |
ctatgttgcagtaaatagtgaataacacgtaattgtaaaaagaagggtctcttgatgacgcatagaagattatgcataagcttgctcctgctgcataatc |
100 |
Q |
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| T |
10009969 |
ctatgttgcagtaaacagtgaataacacgtaattgtgaaaagaagggtctcttgatgacgcatagaagattatgcataagcttgctcctgctgcataatc |
10009870 |
T |
|
| Q |
101 |
ttttatgtaaacagtattgcatgttttatgaaacaattactgttattactactaatttttggtagacaaatatcacaatgacttttatcaatttcgcttt |
200 |
Q |
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| T |
10009869 |
ttttatgtaaacagtattgcatgttttatgaaacaattactgttattactactaatttatggtagacaaatatcacaatgacttttattaatttcgcttt |
10009770 |
T |
|
| Q |
201 |
aatttgtttctcacaattctaca |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
10009769 |
aatttgtttctcacaattctaca |
10009747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 46 - 201
Target Start/End: Original strand, 47249017 - 47249172
Alignment:
| Q |
46 |
ggtctcttgatgacgcatagaagattatgcataagcttgctcctgctgcataatcttttatgtaaacagtattgcatgttttatgaaacaattactgtta |
145 |
Q |
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||||||||||||| |||| ||| |||||| || | | ||||| |||||||||||||||| |||| ||| ||||||||||||||||||||||| ||||| |
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| T |
47249017 |
ggtctcttgatgaggcatcgaaagatatgcagaatcctcctcctactgcataatcttttatataaatagtgttgcatgttttatgaaacaattagtgtta |
47249116 |
T |
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| Q |
146 |
ttactactaatttttggtagacaaatatcacaatgacttttatcaatttcgcttta |
201 |
Q |
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| T |
47249117 |
ttactgataatttatggtagacaagtatcacaatgacttttatcaatttcacttta |
47249172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 163 - 218
Target Start/End: Original strand, 47249179 - 47249234
Alignment:
| Q |
163 |
tagacaaatatcacaatgacttttatcaatttcgctttaatttgtttctcacaatt |
218 |
Q |
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||||||||||| |||||| |||||||||||||| ||||||||||||| |||||||| |
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| T |
47249179 |
tagacaaatattacaatggcttttatcaatttcactttaatttgtttgtcacaatt |
47249234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 218
Target Start/End: Complemental strand, 41325155 - 41325100
Alignment:
| Q |
163 |
tagacaaatatcacaatgacttttatcaatttcgctttaatttgtttctcacaatt |
218 |
Q |
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||||||| ||| |||||| |||||||||||||| ||||||||||||| |||||||| |
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| T |
41325155 |
tagacaagtattacaatggcttttatcaatttcactttaatttgtttgtcacaatt |
41325100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 46 - 201
Target Start/End: Complemental strand, 20905958 - 20905803
Alignment:
| Q |
46 |
ggtctcttgatgacgcatagaagattatgcataagcttgctcctgctgcataatcttttatgtaaacagtattgcatgttttatgaaacaattactgtta |
145 |
Q |
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||||||||||||| |||| |||| |||||| || ||| ||| || ||||||||||||||| |||| || ||||||||||||||||||||||| ||||| |
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| T |
20905958 |
ggtctcttgatgaggcattgaaggatatgcagaatcttcctcatgttgcataatcttttatataaatagcgttgcatgttttatgaaacaattattgtta |
20905859 |
T |
|
| Q |
146 |
ttactactaatttttggtagacaaatatcacaatgacttttatcaatttcgcttta |
201 |
Q |
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||||| |||||| |||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
20905858 |
ttactgataatttatggtagacaagtatcacaatgacttttatcaatttcacttta |
20905803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 218
Target Start/End: Complemental strand, 20905796 - 20905741
Alignment:
| Q |
163 |
tagacaaatatcacaatgacttttatcaatttcgctttaatttgtttctcacaatt |
218 |
Q |
| |
|
||||||| ||| |||||| |||||||||||||| ||||||||||||| |||||||| |
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| T |
20905796 |
tagacaagtattacaatgccttttatcaatttcactttaatttgtttgtcacaatt |
20905741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 89 - 201
Target Start/End: Complemental strand, 42310307 - 42310195
Alignment:
| Q |
89 |
tgctgcataatcttttatgtaaacagtattgcatgttttatgaaacaattactgttattactactaatttttggtagacaaatatcacaatgacttttat |
188 |
Q |
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|||||||||||||||||| |||| ||| ||||||||| ||||||||||||| |||||||| | |||| | |||||||||| |||| ||||||||||||| |
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| T |
42310307 |
tgctgcataatcttttatataaatagtgttgcatgttctatgaaacaattattgttattagtgataatctatggtagacaagtatcgcaatgacttttat |
42310208 |
T |
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| Q |
189 |
caatttcgcttta |
201 |
Q |
| |
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||||||| ||||| |
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| T |
42310207 |
caatttcacttta |
42310195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 218
Target Start/End: Complemental strand, 42310176 - 42310133
Alignment:
| Q |
175 |
acaatgacttttatcaatttcgctttaatttgtttctcacaatt |
218 |
Q |
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||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
42310176 |
acaatgacttttatcaatttcactttaatttgtttgtcacaatt |
42310133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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