View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9340_low_13 (Length: 207)
Name: NF9340_low_13
Description: NF9340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9340_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 72; Significance: 6e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 108 - 191
Target Start/End: Original strand, 38210064 - 38210147
Alignment:
| Q |
108 |
atctacaattgttcataacaacaattctaaacgttgtgaaattgtttagaattgcacttatctaaaaactccattgtttctgtg |
191 |
Q |
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| T |
38210064 |
atctacaattgttctaaacaacaattctaaacgttgtgaaattgtttagaattgcacttatctaaaaactccattgtttttgtg |
38210147 |
T |
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Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 38210019 - 38210066
Alignment:
| Q |
35 |
actaaaactccgatcaagatcccatgtaacaaccgcacacggtacatc |
82 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
38210019 |
actaaaactccgatcaggatcccatgtaacaaccgcacacggtacatc |
38210066 |
T |
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