View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9340_low_16 (Length: 203)

Name: NF9340_low_16
Description: NF9340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9340_low_16
NF9340_low_16
[»] chr3 (9 HSPs)
chr3 (14-70)||(41883223-41883279)
chr3 (14-51)||(6041912-6041949)
chr3 (14-49)||(37522083-37522118)
chr3 (14-51)||(2754745-2754782)
chr3 (14-51)||(3574527-3574564)
chr3 (14-51)||(19650900-19650937)
chr3 (14-51)||(30385039-30385076)
chr3 (14-51)||(37217053-37217090)
chr3 (15-51)||(11347296-11347332)
[»] chr2 (10 HSPs)
chr2 (14-69)||(3989086-3989141)
chr2 (14-49)||(7475508-7475543)
chr2 (14-49)||(23268062-23268097)
chr2 (14-64)||(37335728-37335778)
chr2 (14-51)||(9293576-9293613)
chr2 (14-51)||(10661915-10661952)
chr2 (14-51)||(21936109-21936146)
chr2 (14-47)||(31174834-31174867)
chr2 (14-51)||(35160785-35160822)
chr2 (15-51)||(13354874-13354910)
[»] chr4 (15 HSPs)
chr4 (14-64)||(9088885-9088935)
chr4 (14-64)||(17655445-17655495)
chr4 (14-51)||(10442789-10442826)
chr4 (14-51)||(21802322-21802359)
chr4 (14-51)||(22199289-22199326)
chr4 (14-51)||(31078819-31078856)
chr4 (14-51)||(49387888-49387925)
chr4 (14-49)||(24128269-24128304)
chr4 (16-51)||(36072975-36073010)
chr4 (14-49)||(36073380-36073415)
chr4 (14-49)||(47290096-47290131)
chr4 (14-51)||(2624865-2624902)
chr4 (14-51)||(7745112-7745149)
chr4 (14-51)||(33530688-33530725)
chr4 (14-47)||(53123063-53123096)
[»] chr6 (12 HSPs)
chr6 (14-73)||(29693456-29693515)
chr6 (14-51)||(17176021-17176058)
chr6 (14-51)||(17705465-17705502)
chr6 (14-51)||(33695327-33695364)
chr6 (14-51)||(33696724-33696761)
chr6 (15-51)||(18889698-18889734)
chr6 (14-51)||(6127303-6127340)
chr6 (14-51)||(18365573-18365610)
chr6 (14-51)||(18370837-18370874)
chr6 (14-51)||(23291084-23291121)
chr6 (14-51)||(28675176-28675213)
chr6 (14-50)||(6031741-6031777)
[»] chr7 (9 HSPs)
chr7 (14-64)||(30848584-30848634)
chr7 (14-51)||(15329301-15329338)
chr7 (14-51)||(48880927-48880964)
chr7 (14-51)||(3962007-3962044)
chr7 (14-51)||(4974735-4974772)
chr7 (14-51)||(15577850-15577887)
chr7 (14-51)||(42611839-42611876)
chr7 (14-51)||(45637740-45637777)
chr7 (14-49)||(35444588-35444623)
[»] scaffold0178 (1 HSPs)
scaffold0178 (14-51)||(11649-11686)
[»] chr8 (17 HSPs)
chr8 (14-51)||(26042116-26042153)
chr8 (14-66)||(15972877-15972929)
chr8 (14-61)||(3817930-3817977)
chr8 (14-60)||(3890616-3890662)
chr8 (14-51)||(20091801-20091838)
chr8 (14-51)||(32064773-32064810)
chr8 (14-51)||(34665410-34665447)
chr8 (14-51)||(38016999-38017036)
chr8 (14-51)||(42755042-42755079)
chr8 (15-55)||(3597042-3597082)
chr8 (14-49)||(8453864-8453899)
chr8 (14-49)||(17841850-17841885)
chr8 (14-49)||(40780129-40780164)
chr8 (14-51)||(24211553-24211590)
chr8 (14-51)||(32393886-32393923)
chr8 (14-51)||(39772801-39772838)
chr8 (15-51)||(15187588-15187624)
[»] chr1 (10 HSPs)
chr1 (14-64)||(10167415-10167465)
chr1 (14-51)||(16045798-16045835)
chr1 (14-51)||(40215016-40215053)
chr1 (14-51)||(44094726-44094763)
chr1 (14-49)||(9910293-9910328)
chr1 (113-143)||(17405928-17405958)
chr1 (14-47)||(6883519-6883552)
chr1 (14-51)||(27523255-27523292)
chr1 (16-49)||(32000269-32000302)
chr1 (160-188)||(17405980-17406008)
[»] scaffold0228 (3 HSPs)
scaffold0228 (14-51)||(8430-8467)
scaffold0228 (14-51)||(16012-16049)
scaffold0228 (14-51)||(25964-26001)
[»] scaffold0085 (1 HSPs)
scaffold0085 (14-51)||(47878-47915)
[»] chr5 (7 HSPs)
chr5 (14-51)||(8145403-8145440)
chr5 (16-64)||(31640942-31640990)
chr5 (14-51)||(2477664-2477701)
chr5 (14-51)||(6043511-6043548)
chr5 (14-51)||(11361131-11361168)
chr5 (14-51)||(14138696-14138733)
chr5 (14-51)||(37321793-37321830)
[»] scaffold0471 (1 HSPs)
scaffold0471 (14-49)||(12872-12907)
[»] scaffold0096 (1 HSPs)
scaffold0096 (14-51)||(41039-41076)


Alignment Details
Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 41883223 - 41883279
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgatatataacattgctcattttt 70  Q
    |||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||    
T  41883223 gattattctgccatgtcattcttgaatttttcttgatatatagcattgctcattttt 41883279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 6041949 - 6041912
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6041949 gattattctgtcatgtcattcttgaaattttcttgata 6041912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 37522118 - 37522083
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttga 49  Q
    ||||||||||||||||||||||| ||||||||||||    
T  37522118 gattattctgtcatgtcattcttaaaattttcttga 37522083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 2754782 - 2754745
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  2754782 gattattctgccatgtcattcttaaaattttcttgata 2754745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 3574527 - 3574564
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  3574527 gattattctgccatgtcattcttaaaattttcttgata 3574564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 19650900 - 19650937
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  19650900 gattattctgccatgtcattcttaaaattttcttgata 19650937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 30385076 - 30385039
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    |||||||||| ||||||||| |||||||||||||||||    
T  30385076 gattattctgccatgtcatttttgaaattttcttgata 30385039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 37217053 - 37217090
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  37217053 gattattctgccatgtcattcttaaaattttcttgata 37217090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 11347332 - 11347296
Alignment:
Q  15 attattctgtcatgtcattcttgaaattttcttgata 51  Q
    ||||||||| |||||||||||| ||||||||||||||    
T  11347332 attattctgccatgtcattcttaaaattttcttgata 11347296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 3989141 - 3989086
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgatatataacattgctcatttt 69  Q
    |||||||||| |||||||||||| |||||||||||||||||| |||||||||||||    
T  3989141 gattattctgccatgtcattcttaaaattttcttgatatatagcattgctcatttt 3989086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 49
Target Start/End: Original strand, 7475508 - 7475543
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttga 49  Q
    ||||||||| ||||||||||||||||||||||||||    
T  7475508 gattattctatcatgtcattcttgaaattttcttga 7475543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 49
Target Start/End: Original strand, 23268062 - 23268097
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttga 49  Q
    |||||||||| |||||||||||||||||||||||||    
T  23268062 gattattctgccatgtcattcttgaaattttcttga 23268097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 37335778 - 37335728
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgatatataacattgctc 64  Q
    |||||||||| |||||||||||||||  |||||| ||||||| ||||||||    
T  37335778 gattattctgccatgtcattcttgaatctttcttaatatatagcattgctc 37335728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 9293576 - 9293613
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    |||||||||| |||||||||||||||| ||||||||||    
T  9293576 gattattctgccatgtcattcttgaaaatttcttgata 9293613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 10661952 - 10661915
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  10661952 gattattctgccatgtcattcttaaaattttcttgata 10661915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 21936146 - 21936109
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    |||||||||| ||| |||||||||||||||||||||||    
T  21936146 gattattctgccatatcattcttgaaattttcttgata 21936109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 31174834 - 31174867
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttctt 47  Q
    |||||||||| |||||||||||||||||||||||    
T  31174834 gattattctgccatgtcattcttgaaattttctt 31174867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 35160822 - 35160785
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  35160822 gattattctgccatgtcattcttaaaattttcttgata 35160785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 13354910 - 13354874
Alignment:
Q  15 attattctgtcatgtcattcttgaaattttcttgata 51  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  13354910 attattctgccatatcattcttgaaattttcttgata 13354874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 9088935 - 9088885
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgatatataacattgctc 64  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  9088935 gattattctgccatgtcattcttgaaattttcttgatatatagcattgctc 9088885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 17655495 - 17655445
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgatatataacattgctc 64  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  17655495 gattattctgccatgtcattcttgaaattttcttaatatataacattgctc 17655445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 10442789 - 10442826
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    |||||||||| |||||||||||||||||||||||||||    
T  10442789 gattattctgccatgtcattcttgaaattttcttgata 10442826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 21802322 - 21802359
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    |||||||||| |||||||||||||||||||||||||||    
T  21802322 gattattctgccatgtcattcttgaaattttcttgata 21802359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 22199326 - 22199289
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    |||||||||| |||||||||||||||||||||||||||    
T  22199326 gattattctgccatgtcattcttgaaattttcttgata 22199289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 31078819 - 31078856
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    |||||||||| |||||||||||||||||||||||||||    
T  31078819 gattattctgccatgtcattcttgaaattttcttgata 31078856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 49387888 - 49387925
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    |||||||||| |||||||||||||||||||||||||||    
T  49387888 gattattctgccatgtcattcttgaaattttcttgata 49387925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 24128304 - 24128269
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttga 49  Q
    |||||||||| |||||||||||||||||||||||||    
T  24128304 gattattctgccatgtcattcttgaaattttcttga 24128269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 36073010 - 36072975
Alignment:
Q  16 ttattctgtcatgtcattcttgaaattttcttgata 51  Q
    |||||||| |||||||||||||||||||||||||||    
T  36073010 ttattctgccatgtcattcttgaaattttcttgata 36072975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 36073415 - 36073380
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttga 49  Q
    |||||||||| |||||||||||||||||||||||||    
T  36073415 gattattctgccatgtcattcttgaaattttcttga 36073380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 47290131 - 47290096
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttga 49  Q
    |||||||||| |||||||||||||||||||||||||    
T  47290131 gattattctgccatgtcattcttgaaattttcttga 47290096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 2624902 - 2624865
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    |||||||||| ||| |||||||||||||||||||||||    
T  2624902 gattattctgccatttcattcttgaaattttcttgata 2624865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 7745112 - 7745149
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  7745112 gattattctgccatgtcattcttaaaattttcttgata 7745149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 33530688 - 33530725
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  33530688 gattattctgccatgtcattcttgaatttttcttgata 33530725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 53123096 - 53123063
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttctt 47  Q
    |||||||||| |||||||||||||||||||||||    
T  53123096 gattattctgccatgtcattcttgaaattttctt 53123063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 29693515 - 29693456
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgatatataacattgctcattttttaa 73  Q
    ||||||||||||||||||||||||||  |||||||||||||| |||| |||||| |||||    
T  29693515 gattattctgtcatgtcattcttgaatatttcttgatatatagcattactcattatttaa 29693456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 17176021 - 17176058
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  17176021 gattattctgtcatgtcattcttgaaattttattgata 17176058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 17705465 - 17705502
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  17705465 gattattctgtcatgtcattcttaaaattttcttgata 17705502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 33695327 - 33695364
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    |||||||||| |||||||||||||||||||||||||||    
T  33695327 gattattctgccatgtcattcttgaaattttcttgata 33695364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 33696761 - 33696724
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    |||||||||| |||||||||||||||||||||||||||    
T  33696761 gattattctgccatgtcattcttgaaattttcttgata 33696724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 18889698 - 18889734
Alignment:
Q  15 attattctgtcatgtcattcttgaaattttcttgata 51  Q
    ||||||||| |||||||||||||||||||||||||||    
T  18889698 attattctgccatgtcattcttgaaattttcttgata 18889734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 6127340 - 6127303
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  6127340 gattattctgccatgtcattcttaaaattttcttgata 6127303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 18365573 - 18365610
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    |||||||||| |||||||||||||||||||| ||||||    
T  18365573 gattattctgccatgtcattcttgaaatttttttgata 18365610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 18370837 - 18370874
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    |||||||||| |||||||||||||||||||| ||||||    
T  18370837 gattattctgccatgtcattcttgaaatttttttgata 18370874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 23291084 - 23291121
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  23291084 gattattctgccatgtcattcttaaaattttcttgata 23291121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 28675213 - 28675176
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    |||||||| | |||||||||||||||||||||||||||    
T  28675213 gattattccgacatgtcattcttgaaattttcttgata 28675176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 6031741 - 6031777
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgat 50  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  6031741 gattattctgtcatgtcattcttaaaattttattgat 6031777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 30848634 - 30848584
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgatatataacattgctc 64  Q
    |||||||||| |||||||||||| |||||||||||||||||| ||||||||    
T  30848634 gattattctgccatgtcattcttaaaattttcttgatatatagcattgctc 30848584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 15329338 - 15329301
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    ||||||||||||||||||||||||||||||||||||||    
T  15329338 gattattctgtcatgtcattcttgaaattttcttgata 15329301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 48880927 - 48880964
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    ||||||||||||||||||||||||||||||||||||||    
T  48880927 gattattctgtcatgtcattcttgaaattttcttgata 48880964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 3962044 - 3962007
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  3962044 gattattctgtcatgtcattcttaaaattttcttgata 3962007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 4974735 - 4974772
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    |||||||||| |||||||||||||||||||||||||||    
T  4974735 gattattctgccatgtcattcttgaaattttcttgata 4974772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 15577850 - 15577887
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    |||||||||| |||||||||||||||||||||||||||    
T  15577850 gattattctgccatgtcattcttgaaattttcttgata 15577887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 42611876 - 42611839
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    |||||||||| |||||||||||||||||||||||||||    
T  42611876 gattattctgccatgtcattcttgaaattttcttgata 42611839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 45637777 - 45637740
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    |||||||||| |||||||||||||||||||||||||||    
T  45637777 gattattctgccatgtcattcttgaaattttcttgata 45637740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 35444623 - 35444588
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttga 49  Q
    |||||||||| |||||||||||||||||||||||||    
T  35444623 gattattctgccatgtcattcttgaaattttcttga 35444588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 11686 - 11649
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    ||||||||||||||||||||||||||||||||||||||    
T  11686 gattattctgtcatgtcattcttgaaattttcttgata 11649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 26042116 - 26042153
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26042116 gattattctgtcatgtcattcttgaaattttcttgata 26042153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 15972877 - 15972929
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgatatataacattgctcat 66  Q
    ||||||||||||||||||||||| ||  |||||||||||||| ||||||||||    
T  15972877 gattattctgtcatgtcattcttcaatctttcttgatatatagcattgctcat 15972929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 3817930 - 3817977
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgatatataacattg 61  Q
    |||||||||||||||| ||||||||| ||||||||||||||| |||||    
T  3817930 gattattctgtcatgtaattcttgaatttttcttgatatatagcattg 3817977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 3890616 - 3890662
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgatatataacatt 60  Q
    |||||||||| ||||||||||||||| ||||||||||||||| ||||    
T  3890616 gattattctgccatgtcattcttgaatttttcttgatatatagcatt 3890662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 20091801 - 20091838
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    |||||||||| |||||||||||||||||||||||||||    
T  20091801 gattattctgccatgtcattcttgaaattttcttgata 20091838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 32064810 - 32064773
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    |||||||||| |||||||||||||||||||||||||||    
T  32064810 gattattctgccatgtcattcttgaaattttcttgata 32064773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 34665447 - 34665410
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    |||||||||| |||||||||||||||||||||||||||    
T  34665447 gattattctgccatgtcattcttgaaattttcttgata 34665410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 38017036 - 38016999
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    |||||||||| |||||||||||||||||||||||||||    
T  38017036 gattattctgccatgtcattcttgaaattttcttgata 38016999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 42755042 - 42755079
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    |||||||||| |||||||||||||||||||||||||||    
T  42755042 gattattctgccatgtcattcttgaaattttcttgata 42755079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 3597042 - 3597082
Alignment:
Q  15 attattctgtcatgtcattcttgaaattttcttgatatata 55  Q
    ||||||||| |||||||||||||||| ||||||||||||||    
T  3597042 attattctgccatgtcattcttgaaactttcttgatatata 3597082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 8453899 - 8453864
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttga 49  Q
    ||||||| ||||||||||||||||||||||||||||    
T  8453899 gattattttgtcatgtcattcttgaaattttcttga 8453864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 49
Target Start/End: Original strand, 17841850 - 17841885
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttga 49  Q
    |||||||||| |||||||||||||||||||||||||    
T  17841850 gattattctgccatgtcattcttgaaattttcttga 17841885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 49
Target Start/End: Original strand, 40780129 - 40780164
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttga 49  Q
    |||||||||| |||||||||||||||||||||||||    
T  40780129 gattattctgccatgtcattcttgaaattttcttga 40780164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 24211553 - 24211590
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    |||||||||| |||| ||||||||||||||||||||||    
T  24211553 gattattctgccatgccattcttgaaattttcttgata 24211590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 32393923 - 32393886
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  32393923 gattattctgccatgtcattcttaaaattttcttgata 32393886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 39772801 - 39772838
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    |||||||||| |||||||||||||||||||| ||||||    
T  39772801 gattattctgccatgtcattcttgaaatttttttgata 39772838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 15187624 - 15187588
Alignment:
Q  15 attattctgtcatgtcattcttgaaattttcttgata 51  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  15187624 attattctgccatatcattcttgaaattttcttgata 15187588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 10167465 - 10167415
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgatatataacattgctc 64  Q
    ||||||||| ||||||||||||| ||  |||||||||||||||||||||||    
T  10167465 gattattctatcatgtcattcttaaatctttcttgatatataacattgctc 10167415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 16045798 - 16045835
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    |||||||||| |||||||||||||||||||||||||||    
T  16045798 gattattctgccatgtcattcttgaaattttcttgata 16045835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 40215053 - 40215016
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    |||||||||| |||||||||||||||||||||||||||    
T  40215053 gattattctgccatgtcattcttgaaattttcttgata 40215016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 44094763 - 44094726
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    |||||||||| |||||||||||||||||||||||||||    
T  44094763 gattattctgccatgtcattcttgaaattttcttgata 44094726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 49
Target Start/End: Original strand, 9910293 - 9910328
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttga 49  Q
    |||||||||| |||||||||||||||||||||||||    
T  9910293 gattattctgccatgtcattcttgaaattttcttga 9910328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 143
Target Start/End: Original strand, 17405928 - 17405958
Alignment:
Q  113 aatgggaaataaattgaaatgtgaattacat 143  Q
    |||||||||||||||||||||||||||||||    
T  17405928 aatgggaaataaattgaaatgtgaattacat 17405958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 6883552 - 6883519
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttctt 47  Q
    |||||||||| |||||||||||||||||||||||    
T  6883552 gattattctgccatgtcattcttgaaattttctt 6883519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 27523255 - 27523292
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    ||||||||||||||||||||||| || |||||||||||    
T  27523255 gattattctgtcatgtcattcttaaatttttcttgata 27523292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 49
Target Start/End: Original strand, 32000269 - 32000302
Alignment:
Q  16 ttattctgtcatgtcattcttgaaattttcttga 49  Q
    |||||||||||||||||||||||| |||||||||    
T  32000269 ttattctgtcatgtcattcttgaatttttcttga 32000302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 188
Target Start/End: Original strand, 17405980 - 17406008
Alignment:
Q  160 ggctcaaaggtttcattttcatattttct 188  Q
    |||||||||||||||||||||||||||||    
T  17405980 ggctcaaaggtttcattttcatattttct 17406008  T

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Target: scaffold0228 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: scaffold0228
Description:

Target: scaffold0228; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 8467 - 8430
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    |||||||||| |||||||||||||||||||||||||||    
T  8467 gattattctgccatgtcattcttgaaattttcttgata 8430  T

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Target: scaffold0228; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 16049 - 16012
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    |||||||||| |||||||||||||||||||||||||||    
T  16049 gattattctgccatgtcattcttgaaattttcttgata 16012  T

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Target: scaffold0228; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 26001 - 25964
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    |||||||||| |||||||||||||||||||||||||||    
T  26001 gattattctgccatgtcattcttgaaattttcttgata 25964  T

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Target: scaffold0085 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 47915 - 47878
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    |||||||||| |||||||||||||||||||||||||||    
T  47915 gattattctgccatgtcattcttgaaattttcttgata 47878  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 8145440 - 8145403
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    |||||||||| |||||||||||||||||||||||||||    
T  8145440 gattattctgccatgtcattcttgaaattttcttgata 8145403  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 31640942 - 31640990
Alignment:
Q  16 ttattctgtcatgtcattcttgaaattttcttgatatataacattgctc 64  Q
    |||||||| |||||||||||||||  |||||||||||||| ||||||||    
T  31640942 ttattctgccatgtcattcttgaatctttcttgatatatagcattgctc 31640990  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 2477701 - 2477664
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  2477701 gattattctgccatgtcattcttaaaattttcttgata 2477664  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 6043511 - 6043548
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    |||||||||  |||||||||||||||||||||||||||    
T  6043511 gattattcttccatgtcattcttgaaattttcttgata 6043548  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 11361131 - 11361168
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  11361131 gattattctgccatgtcattcttaaaattttcttgata 11361168  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 14138733 - 14138696
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  14138733 gattattctgccatgtaattcttgaaattttcttgata 14138696  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 37321793 - 37321830
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  37321793 gattattctgccatgtcattcttaaaattttcttgata 37321830  T

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Target: scaffold0471 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 12907 - 12872
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttga 49  Q
    |||||||||| |||||||||||||||||||||||||    
T  12907 gattattctgccatgtcattcttgaaattttcttga 12872  T

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Target: scaffold0096 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 41076 - 41039
Alignment:
Q  14 gattattctgtcatgtcattcttgaaattttcttgata 51  Q
    |||||||||| |||||||||||||||||||| ||||||    
T  41076 gattattctgccatgtcattcttgaaatttttttgata 41039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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