View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9340_low_2 (Length: 555)
Name: NF9340_low_2
Description: NF9340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9340_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 512; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 7 - 542
Target Start/End: Complemental strand, 54103221 - 54102686
Alignment:
| Q |
7 |
tttggtgttgtaaactctataccaaacacatgcagtaaattttaactacatatttaaaaggtcgtagatagcaatgttgtgtctcataattggtattgtc |
106 |
Q |
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| T |
54103221 |
tttggtgttgtaaactctataccaaacacatgcagtaaattttaactacagatttaaaaggtcgtagatagcaatgttgtgtctcataattggtattgtc |
54103122 |
T |
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| Q |
107 |
acccaaaatgaatcagtagcgcagctcgttgtctgtttgcttttcattccgtaaaacttcctctcaatagtcttggtcaaaaataaatacaggttttgat |
206 |
Q |
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| T |
54103121 |
acccaaaatgaatcagtggcgcaactcgttgtttgtttgcttttcattccgtaaaacttcctctcaatagtcttggtcaaaaataaatacaggttttgat |
54103022 |
T |
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| Q |
207 |
ggagtggagatacatggagctaatggatacttgcttgatcaattcctaaaggacaaagtgaacgatagagatgacgggtatggagggagcttagaaaatc |
306 |
Q |
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| T |
54103021 |
ggagtggagatacatggagctaatggatacttgcttgatcaattcctaaaggacaaagtgaacgatagagatgacgagtatggagggagcttagaaaatc |
54102922 |
T |
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| Q |
307 |
gttgtcgcttccctctagaggttgtgaaagcagttgttgatgagactggagctgacaaagttggtgttagactttcaccttatgctgattattgtggttg |
406 |
Q |
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| T |
54102921 |
gttgtcgcttccctctagaggttgtgaaagcagttgttgatgagattggagctgacaaagttggtgttagactttcaccttatgctgattattgtggttg |
54102822 |
T |
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| Q |
407 |
tggagactctaaccctcatgctttaggcatctacatggctaagtcattaagtcaattaggcattctctattgtcatgtcattgaacctgggatgtgcacc |
506 |
Q |
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| T |
54102821 |
tggagactctaaccctcatgctttaggcatctacatggctaagtcattaagtcaattaggcattctctattgtcatgtcattgaacctgggatgtgcacc |
54102722 |
T |
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| Q |
507 |
atgtttgaaaaatatgacaccaatgagtccttaatg |
542 |
Q |
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| T |
54102721 |
atgtttgaaaaatatgacaccaatgagtccttaatg |
54102686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 268
Target Start/End: Complemental strand, 44171443 - 44171371
Alignment:
| Q |
196 |
caggttttgatggagtggagatacatggagctaatggatacttgcttgatcaattcctaaaggacaaagtgaa |
268 |
Q |
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| T |
44171443 |
caggttttgatggtgtggaaattcatggagctcatggctacctacttgaacaattcatgaaggataaagtgaa |
44171371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 268
Target Start/End: Complemental strand, 44191739 - 44191667
Alignment:
| Q |
196 |
caggttttgatggagtggagatacatggagctaatggatacttgcttgatcaattcctaaaggacaaagtgaa |
268 |
Q |
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| T |
44191739 |
caggttttgatggtgtggaaattcatggagctcatggctacctacttgaacaattcatgaaggataaagtgaa |
44191667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 11511283 - 11511315
Alignment:
| Q |
7 |
tttggtgttgtaaactctataccaaacacatgc |
39 |
Q |
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| T |
11511283 |
tttggtgttgtaaactctacaccaaacacatgc |
11511315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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