View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9340_low_4 (Length: 544)
Name: NF9340_low_4
Description: NF9340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9340_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 18 - 489
Target Start/End: Complemental strand, 56378504 - 56378033
Alignment:
| Q |
18 |
agaccaagagcctgatcaggaagaggtaacatgaatttcctcatgctgtggtggtgctgctgtctgttgaagttgaaattgaaggctgagtgatggtggt |
117 |
Q |
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| T |
56378504 |
agaccaagagcctgatcaggaagaggtaacatgaatttcctcatgctgtggtggtgctgctgtctgttgaagttgaagttgaaggctgagtgatggtggt |
56378405 |
T |
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| Q |
118 |
agttctcctgatcctcagtctcaccttggatttcttttctgtggaagtttctgtgacaatggcaggcagagcagttgagtgcttcaatggttccttgttc |
217 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56378404 |
agttctcctgatcctcagtctcaccttggacttcttttctgtggaagtttctgtgacaatggcaggcagagcagttgagtgcttcaatggttccttgttc |
56378305 |
T |
|
| Q |
218 |
accactgggcatgaactcaccacagccatctgtagcattccctcccattgcagctgcatggttctttaggcattctctgtacctcacaacaactggtgac |
317 |
Q |
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| T |
56378304 |
accactgggcatgaactcaccacagccatctgtagcattccctcccattgcagctgcatggttctttaggcattctctgtacctcacaacaactgatgac |
56378205 |
T |
|
| Q |
318 |
gatttcttgtaggaggaatgatcatgatctaattccacaccagtactaacagctgctgcttgcataggggtggtggtgccattaactgaagggttttggg |
417 |
Q |
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| T |
56378204 |
gatttcttgtaggaggaatgatcatgatctaattccacaccagtactaacagctgctgcttgcataggggtggttgtgccattaactgaagggttttggg |
56378105 |
T |
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| Q |
418 |
gtactactggcactactgcggctgaagaagatgatgatataataatattactgtggttgtggtgtagtggaa |
489 |
Q |
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| T |
56378104 |
gtactactgccactactgcggctgaagaagatgatgatataatgatattactgtggttgtggtgtagtggaa |
56378033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 147 - 283
Target Start/End: Original strand, 34371250 - 34371386
Alignment:
| Q |
147 |
atttcttttctgtggaagtttctgtgacaatggcaggcagagcagttgagtgcttcaatggttccttgttcaccactgggcatgaactcaccacagccat |
246 |
Q |
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||||||||||||||||||||||| || |||| ||| ||| | || ||||| ||||||| || | | ||| ||||| |||||||| |||||||| |||| |
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| T |
34371250 |
atttcttttctgtggaagtttctatggcaattgcaagcacaacatttgagagcttcaagtgtgtcattttctccacttggcatgaattcaccacatccat |
34371349 |
T |
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| Q |
247 |
ctgtagcattccctcccattgcagctgcatggttctt |
283 |
Q |
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| T |
34371350 |
caattgcattgccaccaattgtagctgcatggttctt |
34371386 |
T |
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