View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9340_low_5 (Length: 526)
Name: NF9340_low_5
Description: NF9340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9340_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-128; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 138 - 378
Target Start/End: Complemental strand, 3331906 - 3331666
Alignment:
| Q |
138 |
ttcagcaacaacaacaacagcttttaggagattcaactgctccactttttcaagctatgcctcctcctaattctaatcctaatcttaatcctaatcttct |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3331906 |
ttcagcaacaacaacaacagcttttaggagattcaactgctccactttttcaagctatgcatcctcctaattctaatcctaatcttaatcctaatcttct |
3331807 |
T |
|
| Q |
238 |
cggtcagatgccttctgataatttctggccaaccgggcgttctccgtattgatcatgatgatattattgcaaagctatcattgttgggaacaaatgttgc |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3331806 |
cggtcagatgccttctgataatttctggccaaccgggcgttctccgtattgatcatgatgacattattgcaaagctatcattgttgggaacaaatgttgc |
3331707 |
T |
|
| Q |
338 |
aagaaggaaggaattggaagctagggaattcgatgatgagg |
378 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3331706 |
aagaaggaaggaattggaagctagggaattcgatgatgagg |
3331666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 3332052 - 3331950
Alignment:
| Q |
1 |
tgcttctggacctgttgttattatgtctgcttcttttagtaacgctgcttatgagagacttcctttggaagaagatgatggttcttctattcaacaactt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
3332052 |
tgcttctggacctgttgttattatgtctgcttcttttagtaacgctgcttatgagagacttcctttggaagatgatgatggttcttctattcaacaactt |
3331953 |
T |
|
| Q |
101 |
caa |
103 |
Q |
| |
|
||| |
|
|
| T |
3331952 |
caa |
3331950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 450 - 522
Target Start/End: Complemental strand, 3331594 - 3331522
Alignment:
| Q |
450 |
ggttctaggtgagttgatgtatgttgaatttgagactgtaattaaattgatgtatccttattagtattatcta |
522 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3331594 |
ggttctaggtgagttgatgtatgctgaatttgagactgtaattaaattgatgtatccttattattattatcta |
3331522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University