View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9340_low_6 (Length: 458)
Name: NF9340_low_6
Description: NF9340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9340_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 27 - 441
Target Start/End: Complemental strand, 4776273 - 4775855
Alignment:
| Q |
27 |
ttctgctcgcaacctaaacccgactccacatactgtgacagtaaggaatttcgcagtatacttggtgccttacactacctttcaatcactcgcccagaca |
126 |
Q |
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| T |
4776273 |
ttctgctcacaacctaaacccgactccacatactgtgacagtaaggaatttcgcagtatgcttggtgccttacactacctttcaatcactcgcccagaca |
4776174 |
T |
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| Q |
127 |
tagcatttccagtgaataaactagcataacaaatgcaagctcctactgtgacagatatgcaagccttgaagagagtattgcgctatctcaaatccaccat |
226 |
Q |
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| T |
4776173 |
ttgcatttccagtgaataaactagcataacaaatgcaagctcctactgtgacagatatgcaagccttgaagagagtattgcgctatctcaaatccaccat |
4776074 |
T |
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| Q |
227 |
ctccaatggactccatctcacaagatcttcaaatacaagcctcacaagcttttgtgatgcagattgggcaggagacacaattgacagga----aacaggt |
322 |
Q |
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| T |
4776073 |
ctccaatggactccatctcacaagatcttcaaatacaaacctcacaagcttttgtgatgcagattaggcaggagacacaattgacaggaaatcaacaggt |
4775974 |
T |
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| Q |
323 |
gcttatttaatttatattggccctaatattatctcttggtcatgcaagaagcaaccaacaattgcaaaatcgtcaactgaagctgaatatcgtactatag |
422 |
Q |
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| T |
4775973 |
gcttatttaatttattttggccctaatattatctcttggtcatgcaagaagcaaccaacaattgcaaaatcgtcaactgaagctgaatatcgtactatag |
4775874 |
T |
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| Q |
423 |
cagccactactcaagaatt |
441 |
Q |
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| T |
4775873 |
cagccactactcaagaatt |
4775855 |
T |
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Target: chr5 (Bit Score: 136; Significance: 9e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 261 - 441
Target Start/End: Complemental strand, 43061400 - 43061216
Alignment:
| Q |
261 |
acaagcctcacaagcttttgtgatgcagattgggcaggagacacaattgacagga----aacaggtgcttatttaatttatattggccctaatattatct |
356 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||| |
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| T |
43061400 |
acaagcctcacaaacttttgtgatgcagattgggcaggagacacaattgacaggatatgaacaggtgcttatttcatttattttggccctaatattatct |
43061301 |
T |
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| Q |
357 |
cttggtcatgcaagaagcaaccaacaattgcaaaatcgtcaactgaagctgaatatcgtactatagcagccactactcaagaatt |
441 |
Q |
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| T |
43061300 |
cttggtcatgcaagaagcagccaacagttgcaaaatcatcaactgaagctgaatatcggactatagcagccactactcaggaatt |
43061216 |
T |
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