View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9340_low_8 (Length: 328)

Name: NF9340_low_8
Description: NF9340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9340_low_8
NF9340_low_8
[»] chr1 (14 HSPs)
chr1 (75-319)||(17405671-17405911)
chr1 (1-67)||(20304923-20304990)
chr1 (1-67)||(51737710-51737777)
chr1 (1-64)||(40215193-40215257)
chr1 (1-67)||(18404653-18404720)
chr1 (1-67)||(36966501-36966568)
chr1 (1-67)||(41876235-41876302)
chr1 (1-65)||(25463881-25463946)
chr1 (1-65)||(25973612-25973677)
chr1 (1-65)||(37821629-37821694)
chr1 (35-65)||(3559857-3559887)
chr1 (35-65)||(6883727-6883757)
chr1 (1-67)||(33786424-33786491)
chr1 (35-67)||(44094937-44094969)
[»] scaffold0228 (2 HSPs)
scaffold0228 (1-67)||(16189-16256)
scaffold0228 (1-67)||(26141-26208)
[»] chr4 (19 HSPs)
chr4 (1-67)||(31078612-31078679)
chr4 (1-67)||(46442049-46442116)
chr4 (1-67)||(53123236-53123303)
chr4 (1-66)||(10442581-10442647)
chr4 (1-65)||(36073554-36073619)
chr4 (1-63)||(9089075-9089138)
chr4 (1-67)||(22199464-22199531)
chr4 (1-67)||(47290271-47290338)
chr4 (1-66)||(21802114-21802180)
chr4 (1-66)||(44893007-44893073)
chr4 (35-67)||(11314044-11314076)
chr4 (1-65)||(33530479-33530544)
chr4 (1-65)||(44893631-44893696)
chr4 (4-67)||(36073159-36073223)
chr4 (35-65)||(25063369-25063399)
chr4 (35-67)||(2625077-2625109)
chr4 (35-67)||(4751687-4751719)
chr4 (35-63)||(24128479-24128507)
chr4 (35-67)||(37219872-37219904)
[»] chr3 (17 HSPs)
chr3 (1-67)||(3137207-3137274)
chr3 (1-67)||(22426138-22426205)
chr3 (1-67)||(33113999-33114066)
chr3 (1-67)||(34482681-34482748)
chr3 (1-67)||(6042082-6042149)
chr3 (1-67)||(37216846-37216913)
chr3 (1-65)||(3089624-3089689)
chr3 (35-67)||(3456304-3456336)
chr3 (35-67)||(36864825-36864857)
chr3 (35-67)||(40328072-40328104)
chr3 (35-67)||(48161146-48161178)
chr3 (35-65)||(3574321-3574351)
chr3 (35-65)||(19650695-19650725)
chr3 (1-63)||(33145917-33145980)
chr3 (35-65)||(37522293-37522323)
chr3 (38-67)||(8361832-8361861)
chr3 (1-66)||(41224439-41224505)
[»] chr8 (21 HSPs)
chr8 (1-66)||(1503637-1503703)
chr8 (1-66)||(26041907-26041973)
chr8 (1-66)||(37985850-37985916)
chr8 (1-66)||(40779923-40779989)
chr8 (1-65)||(10044553-10044618)
chr8 (1-65)||(17841645-17841710)
chr8 (1-64)||(14129064-14129128)
chr8 (1-63)||(20091598-20091661)
chr8 (1-63)||(34665586-34665649)
chr8 (35-67)||(1645757-1645789)
chr8 (1-65)||(6108028-6108093)
chr8 (35-66)||(15187800-15187831)
chr8 (35-66)||(32064986-32065017)
chr8 (35-65)||(3596836-3596866)
chr8 (1-63)||(24211169-24211232)
chr8 (35-65)||(25581034-25581064)
chr8 (1-67)||(31347569-31347636)
chr8 (35-65)||(42754837-42754867)
chr8 (38-67)||(7017651-7017680)
chr8 (35-63)||(37132477-37132505)
chr8 (35-63)||(38017173-38017201)
[»] chr7 (11 HSPs)
chr7 (1-66)||(48880721-48880787)
chr7 (1-65)||(24395176-24395241)
chr7 (1-65)||(25167651-25167716)
chr7 (1-67)||(3962183-3962250)
chr7 (1-63)||(4974532-4974595)
chr7 (1-67)||(15329479-15329546)
chr7 (1-66)||(42612016-42612082)
chr7 (35-67)||(15577640-15577672)
chr7 (35-66)||(35445637-35445668)
chr7 (35-65)||(35876484-35876514)
chr7 (38-66)||(15238627-15238655)
[»] chr5 (12 HSPs)
chr5 (1-66)||(4892407-4892473)
chr5 (1-65)||(8145578-8145643)
chr5 (1-65)||(33584124-33584189)
chr5 (1-67)||(25398443-25398510)
chr5 (1-66)||(3521801-3521867)
chr5 (1-66)||(37321587-37321653)
chr5 (1-65)||(6043307-6043372)
chr5 (4-65)||(38899520-38899583)
chr5 (35-65)||(2477876-2477906)
chr5 (35-64)||(3363019-3363048)
chr5 (35-63)||(12614483-12614511)
chr5 (38-66)||(17545476-17545504)
[»] chr2 (11 HSPs)
chr2 (1-65)||(33380412-33380477)
chr2 (1-65)||(35160964-35161029)
chr2 (1-67)||(13355053-13355120)
chr2 (1-65)||(9293370-9293435)
chr2 (1-65)||(10662093-10662158)
chr2 (35-67)||(22592953-22592985)
chr2 (1-65)||(23267857-23267922)
chr2 (1-67)||(34320961-34321017)
chr2 (35-65)||(7475303-7475333)
chr2 (35-67)||(27847801-27847833)
chr2 (38-66)||(43331155-43331183)
[»] chr6 (12 HSPs)
chr6 (1-67)||(17705262-17705329)
chr6 (1-67)||(28675353-28675420)
chr6 (1-67)||(33696902-33696969)
chr6 (1-65)||(17175816-17175881)
chr6 (35-67)||(29693686-29693718)
chr6 (35-67)||(32702445-32702477)
chr6 (1-64)||(34238883-34238947)
chr6 (35-65)||(18365369-18365399)
chr6 (35-65)||(18370633-18370663)
chr6 (35-65)||(33695121-33695151)
chr6 (39-67)||(18889451-18889479)
chr6 (35-67)||(23290874-23290906)
[»] scaffold0085 (1 HSPs)
scaffold0085 (1-65)||(48054-48119)
[»] scaffold0204 (1 HSPs)
scaffold0204 (35-65)||(4636-4666)
[»] scaffold0096 (1 HSPs)
scaffold0096 (35-65)||(41250-41280)
[»] scaffold0471 (1 HSPs)
scaffold0471 (35-63)||(13082-13110)


Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 75 - 319
Target Start/End: Complemental strand, 17405911 - 17405671
Alignment:
Q  75 tatatattcctcattttcctagatcagattcaaattaggatattttccaagtttcgaaatggaatttatgttaagacatatcaaaacgacaagatttgta 174  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  17405911 tatatattccccattttcctagatcagattcaaattaggatattttccaagtttcaaaatggaatttatgttaagacatatcaaaacgacaagatttgta 17405812  T
Q  175 atcaaaatcgaatcaagagcaaccttcctttgttttccccaaagagtgtacgtagtaagaattattaaattaacatgtggtttttccaccataatttttt 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  17405811 atcaaaatcgaatcaagagcaaccttcctttgttttccccaaagagt----gtagtaagaattattaaattaacatgtgctttttccaccataatttttt 17405716  T
Q  275 ctcttagtatatatatttgtannnnnnnagctttacaagtataat 319  Q
    |||||||||||||||||||||       |||||||||||||||||    
T  17405715 ctcttagtatatatatttgtatttttttagctttacaagtataat 17405671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 20304990 - 20304923
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcctt 67  Q
    |||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||    
T  20304990 tgattattgtgccatgtcattcttgaatctttcttataaaatcattcttgatatctagcattttcctt 20304923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 51737710 - 51737777
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcctt 67  Q
    |||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||    
T  51737710 tgattattgtgccatgtcattcttgaatttttcttataaaatcattcttgatatctagcattttcctt 51737777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 40215193 - 40215257
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttc 64  Q
    |||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||    
T  40215193 tgattattgtgccatgtcattcttgaatctttcttataaaatcattcttgatatctagcattttc 40215257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 18404653 - 18404720
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcctt 67  Q
    |||||||||||||||||||||||| ||        |||||||||||||||||||||||||||||||||    
T  18404653 tgattattgtgccatgtcattcttaaatctttcttataaaatcattcttgatatctagcattttcctt 18404720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 36966568 - 36966501
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcctt 67  Q
    ||||||||||||||||| |||||||||        |||||||||||||||||||||||||||||||||    
T  36966568 tgattattgtgccatgttattcttgaatttttcttataaaatcattcttgatatctagcattttcctt 36966501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 41876302 - 41876235
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcctt 67  Q
    |||||||||||| ||||||||||||||        |||||||||||||||||||||||||||||||||    
T  41876302 tgattattgtgctatgtcattcttgaatttttcttataaaatcattcttgatatctagcattttcctt 41876235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 25463881 - 25463946
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcc 65  Q
    ||||||||||||||||||||||||| |        |||||||||||||||||||||||||||||||    
T  25463881 tgattattgtgccatgtcattcttggatctttcttataaaatcattcttgatatctagcattttcc 25463946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 25973612 - 25973677
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcc 65  Q
    ||||||||||| |||||||||||||||        |||||||||||||||||||||||||||||||    
T  25973612 tgattattgtgtcatgtcattcttgaatttttcttataaaatcattcttgatatctagcattttcc 25973677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 37821694 - 37821629
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcc 65  Q
    ||||||||||| |||||||||||||||        |||||||||||||||||||||||||||||||    
T  37821694 tgattattgtgtcatgtcattcttgaatttttcttataaaatcattcttgatatctagcattttcc 37821629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 65
Target Start/End: Original strand, 3559857 - 3559887
Alignment:
Q  35 ataaaatcattcttgatatctagcattttcc 65  Q
    |||||||||||||||||||||||||||||||    
T  3559857 ataaaatcattcttgatatctagcattttcc 3559887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 65
Target Start/End: Original strand, 6883727 - 6883757
Alignment:
Q  35 ataaaatcattcttgatatctagcattttcc 65  Q
    |||||||||||||||||||||||||||||||    
T  6883727 ataaaatcattcttgatatctagcattttcc 6883757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 33786491 - 33786424
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnnata-aaatcattcttgatatctagcattttcctt 67  Q
    |||||||||||||||||||||||||||         | ||||||||||||||||||||||||||||||    
T  33786491 tgattattgtgccatgtcattcttgaatctttcttgataaatcattcttgatatctagcattttcctt 33786424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 44094937 - 44094969
Alignment:
Q  35 ataaaatcattcttgatatctagcattttcctt 67  Q
    ||||||| |||||||||||||||||||||||||    
T  44094937 ataaaataattcttgatatctagcattttcctt 44094969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0228
Description:

Target: scaffold0228; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 16189 - 16256
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcctt 67  Q
    |||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||    
T  16189 tgattattgtgccatgtcattcttgaatttttcttataaaatcattcttgatatctagcattttcctt 16256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 26141 - 26208
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcctt 67  Q
    |||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||    
T  26141 tgattattgtgccatgtcattcttgaatttttcttataaaatcattcttgatatctagcattttcctt 26208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 31078679 - 31078612
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcctt 67  Q
    |||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||    
T  31078679 tgattattgtgccatgtcattcttgaattttttttataaaatcattcttgatatctagcattttcctt 31078612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 46442049 - 46442116
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcctt 67  Q
    |||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||    
T  46442049 tgattattgtgccatgtcattcttgaatttttcttataaaatcattcttgatatctagcattttcctt 46442116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 53123236 - 53123303
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcctt 67  Q
    |||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||    
T  53123236 tgattattgtgccatgtcattcttgaatttttcttataaaatcattcttgatatctagcattttcctt 53123303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 10442647 - 10442581
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcct 66  Q
    |||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||    
T  10442647 tgattattgtgccatgtcattcttgaatctttcttataaaatcattcttgatatctagcattttcct 10442581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 36073554 - 36073619
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcc 65  Q
    |||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||    
T  36073554 tgattattgtgccatgtcattcttgaatttttcttataaaatcattcttgatatctagcattttcc 36073619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 9089075 - 9089138
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcatttt 63  Q
    |||||||||||||||||||||||||||        |||||||||||||||||||||||||||||    
T  9089075 tgattattgtgccatgtcattcttgaatttttcttataaaatcattcttgatatctagcatttt 9089138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 22199464 - 22199531
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcctt 67  Q
    ||||||||||||||||||||||||| |        |||||||||||||||||||||||||||||||||    
T  22199464 tgattattgtgccatgtcattcttggatctttcttataaaatcattcttgatatctagcattttcctt 22199531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 47290271 - 47290338
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcctt 67  Q
    |||||||||| ||||||||||||||||        |||||||||||||||||||||||||||||||||    
T  47290271 tgattattgtaccatgtcattcttgaatttttcttataaaatcattcttgatatctagcattttcctt 47290338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 21802180 - 21802114
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcct 66  Q
    ||||||||||| |||||||||||||||        ||||||||||||||||||||||||||||||||    
T  21802180 tgattattgtgtcatgtcattcttgaatctttcttataaaatcattcttgatatctagcattttcct 21802114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 44893073 - 44893007
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcct 66  Q
    |||||||||||||||||||||||| ||        ||||||||||||||||||||||||||||||||    
T  44893073 tgattattgtgccatgtcattcttaaatttttcttataaaatcattcttgatatctagcattttcct 44893007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 67
Target Start/End: Complemental strand, 11314076 - 11314044
Alignment:
Q  35 ataaaatcattcttgatatctagcattttcctt 67  Q
    |||||||||||||||||||||||||||||||||    
T  11314076 ataaaatcattcttgatatctagcattttcctt 11314044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 33530544 - 33530479
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcc 65  Q
    ||||||||||||||||||||||||| |        |||||||||||||||||||||||||||||||    
T  33530544 tgattattgtgccatgtcattcttggatcttttttataaaatcattcttgatatctagcattttcc 33530479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 44893631 - 44893696
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcc 65  Q
    |||||||||||||||||||||||| ||        |||||||||||||||||||||||||||||||    
T  44893631 tgattattgtgccatgtcattcttaaatttttcttataaaatcattcttgatatctagcattttcc 44893696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 36073159 - 36073223
Alignment:
Q  4 ttattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcctt 67  Q
    ||||||||||||||||||||||||        ||||||||||| |||||||||||||||||||||    
T  36073159 ttattgtgccatgtcattcttgaatttttcttataaaatcatttttgatatctagcattttcctt 36073223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 65
Target Start/End: Complemental strand, 25063399 - 25063369
Alignment:
Q  35 ataaaatcattcttgatatctagcattttcc 65  Q
    |||||||||||||||||||||||||||||||    
T  25063399 ataaaatcattcttgatatctagcattttcc 25063369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 2625077 - 2625109
Alignment:
Q  35 ataaaatcattcttgatatctagcattttcctt 67  Q
    |||||||||||||||||||||| ||||||||||    
T  2625077 ataaaatcattcttgatatctaacattttcctt 2625109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 4751687 - 4751719
Alignment:
Q  35 ataaaatcattcttgatatctagcattttcctt 67  Q
    ||||||| |||||||||||||||||||||||||    
T  4751687 ataaaattattcttgatatctagcattttcctt 4751719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 63
Target Start/End: Original strand, 24128479 - 24128507
Alignment:
Q  35 ataaaatcattcttgatatctagcatttt 63  Q
    |||||||||||||||||||||||||||||    
T  24128479 ataaaatcattcttgatatctagcatttt 24128507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 37219872 - 37219904
Alignment:
Q  35 ataaaatcattcttgatatctagcattttcctt 67  Q
    |||||||||||||||||||||| ||||||||||    
T  37219872 ataaaatcattcttgatatctaacattttcctt 37219904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 3137274 - 3137207
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcctt 67  Q
    |||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||    
T  3137274 tgattattgtgccatgtcattcttgaatttttcttataaaatcattcttgatatctagcattttcctt 3137207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 22426205 - 22426138
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcctt 67  Q
    |||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||    
T  22426205 tgattattgtgccatgtcattcttgaatctttcttataaaatcattcttgatatctagcattttcctt 22426138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 33113999 - 33114066
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcctt 67  Q
    |||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||    
T  33113999 tgattattgtgccatgtcattcttgaatctttcttataaaatcattcttgatatctagcattttcctt 33114066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 34482748 - 34482681
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcctt 67  Q
    |||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||    
T  34482748 tgattattgtgccatgtcattcttgaatttttcttataaaatcattcttgatatctagcattttcctt 34482681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 6042082 - 6042149
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcctt 67  Q
    ||||||||||||||||||||||||| |        |||||||||||||||||||||||||||||||||    
T  6042082 tgattattgtgccatgtcattcttggatctttcttataaaatcattcttgatatctagcattttcctt 6042149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 37216913 - 37216846
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcctt 67  Q
    |||||||||| ||||||||||||||||        |||||||||||||||||||||||||||||||||    
T  37216913 tgattattgtaccatgtcattcttgaatctttcttataaaatcattcttgatatctagcattttcctt 37216846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 3089624 - 3089689
Alignment:
Q  1 tgattattgtgccatgtcattctt-gaannnnnnnataaaatcattcttgatatctagcattttcc 65  Q
    |||||||||||||||||||||||| ||        |||||||||||||||||||||||||||||||    
T  3089624 tgattattgtgccatgtcattcttagatctttcttataaaatcattcttgatatctagcattttcc 3089689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 3456304 - 3456336
Alignment:
Q  35 ataaaatcattcttgatatctagcattttcctt 67  Q
    |||||||||||||||||||||||||||||||||    
T  3456304 ataaaatcattcttgatatctagcattttcctt 3456336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 67
Target Start/End: Complemental strand, 36864857 - 36864825
Alignment:
Q  35 ataaaatcattcttgatatctagcattttcctt 67  Q
    |||||||||||||||||||||||||||||||||    
T  36864857 ataaaatcattcttgatatctagcattttcctt 36864825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 40328072 - 40328104
Alignment:
Q  35 ataaaatcattcttgatatctagcattttcctt 67  Q
    |||||||||||||||||||||||||||||||||    
T  40328072 ataaaatcattcttgatatctagcattttcctt 40328104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 48161146 - 48161178
Alignment:
Q  35 ataaaatcattcttgatatctagcattttcctt 67  Q
    |||||||||||||||||||||||||||||||||    
T  48161146 ataaaatcattcttgatatctagcattttcctt 48161178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 65
Target Start/End: Complemental strand, 3574351 - 3574321
Alignment:
Q  35 ataaaatcattcttgatatctagcattttcc 65  Q
    |||||||||||||||||||||||||||||||    
T  3574351 ataaaatcattcttgatatctagcattttcc 3574321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 65
Target Start/End: Complemental strand, 19650725 - 19650695
Alignment:
Q  35 ataaaatcattcttgatatctagcattttcc 65  Q
    |||||||||||||||||||||||||||||||    
T  19650725 ataaaatcattcttgatatctagcattttcc 19650695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 33145917 - 33145980
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcatttt 63  Q
    ||||||||||| |||||||||||||||        |||||||||||||||||||||||||||||    
T  33145917 tgattattgtgtcatgtcattcttgaatctttcttataaaatcattcttgatatctagcatttt 33145980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 65
Target Start/End: Original strand, 37522293 - 37522323
Alignment:
Q  35 ataaaatcattcttgatatctagcattttcc 65  Q
    |||||||||||||||||||||||||||||||    
T  37522293 ataaaatcattcttgatatctagcattttcc 37522323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 67
Target Start/End: Complemental strand, 8361861 - 8361832
Alignment:
Q  38 aaatcattcttgatatctagcattttcctt 67  Q
    ||||||||||||||||||||||||||||||    
T  8361861 aaatcattcttgatatctagcattttcctt 8361832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 41224439 - 41224505
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnnata-aaatcattcttgatatctagcattttcct 66  Q
    |||||||||||||||||||||||||||         | |||||||||||||||||||||||||||||    
T  41224439 tgattattgtgccatgtcattcttgaatatttcttgataaatcattcttgatatctagcattttcct 41224505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 1503703 - 1503637
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcct 66  Q
    |||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||    
T  1503703 tgattattgtgccatgtcattcttgaatttttcttataaaatcattcttgatatctagcattttcct 1503637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 26041973 - 26041907
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcct 66  Q
    |||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||    
T  26041973 tgattattgtgccatgtcattcttgaatttttcttataaaatcattcttgatatctagcattttcct 26041907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 37985916 - 37985850
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcct 66  Q
    |||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||    
T  37985916 tgattattgtgccatgtcattcttgaatctttcttataaaatcattcttgatatctagcattttcct 37985850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 40779989 - 40779923
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcct 66  Q
    |||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||    
T  40779989 tgattattgtgccatgtcattcttgaatttttcttataaaatcattcttgatatctagcattttcct 40779923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 10044553 - 10044618
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcc 65  Q
    |||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||    
T  10044553 tgattattgtgccatgtcattcttgaatctttcttataaaatcattcttgatatctagcattttcc 10044618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 17841710 - 17841645
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcc 65  Q
    |||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||    
T  17841710 tgattattgtgccatgtcattcttgaatttttcttataaaatcattcttgatatctagcattttcc 17841645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 14129064 - 14129128
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttc 64  Q
    |||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||    
T  14129064 tgattattgtgccatgtcattcttgaatatttcttataaaatcattcttgatatctagcattttc 14129128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 20091661 - 20091598
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcatttt 63  Q
    |||||||||||||||||||||||||||        |||||||||||||||||||||||||||||    
T  20091661 tgattattgtgccatgtcattcttgaatctttcttataaaatcattcttgatatctagcatttt 20091598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 34665586 - 34665649
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcatttt 63  Q
    |||||||||||||||||||||||||||        |||||||||||||||||||||||||||||    
T  34665586 tgattattgtgccatgtcattcttgaatctttcttataaaatcattcttgatatctagcatttt 34665649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 67
Target Start/End: Complemental strand, 1645789 - 1645757
Alignment:
Q  35 ataaaatcattcttgatatctagcattttcctt 67  Q
    |||||||||||||||||||||||||||||||||    
T  1645789 ataaaatcattcttgatatctagcattttcctt 1645757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 6108093 - 6108028
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcc 65  Q
    ||||||||||| |||||||||||||||        |||||||||||||||||||||||||||||||    
T  6108093 tgattattgtgtcatgtcattcttgaatttttcttataaaatcattcttgatatctagcattttcc 6108028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 66
Target Start/End: Original strand, 15187800 - 15187831
Alignment:
Q  35 ataaaatcattcttgatatctagcattttcct 66  Q
    ||||||||||||||||||||||||||||||||    
T  15187800 ataaaatcattcttgatatctagcattttcct 15187831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 66
Target Start/End: Original strand, 32064986 - 32065017
Alignment:
Q  35 ataaaatcattcttgatatctagcattttcct 66  Q
    ||||||||||||||||||||||||||||||||    
T  32064986 ataaaatcattcttgatatctagcattttcct 32065017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 65
Target Start/End: Complemental strand, 3596866 - 3596836
Alignment:
Q  35 ataaaatcattcttgatatctagcattttcc 65  Q
    |||||||||||||||||||||||||||||||    
T  3596866 ataaaatcattcttgatatctagcattttcc 3596836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 24211232 - 24211169
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcatttt 63  Q
    ||||||||||||||||||||||||| |        |||||||||||||||||||||||||||||    
T  24211232 tgattattgtgccatgtcattcttggatctttcttataaaatcattcttgatatctagcatttt 24211169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 65
Target Start/End: Complemental strand, 25581064 - 25581034
Alignment:
Q  35 ataaaatcattcttgatatctagcattttcc 65  Q
    |||||||||||||||||||||||||||||||    
T  25581064 ataaaatcattcttgatatctagcattttcc 25581034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 31347636 - 31347569
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnnata-aaatcattcttgatatctagcattttcctt 67  Q
    |||||||||||||||||||||||||||         | ||||||||||||||||||||||||||||||    
T  31347636 tgattattgtgccatgtcattcttgaatctttcttgataaatcattcttgatatctagcattttcctt 31347569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 65
Target Start/End: Complemental strand, 42754867 - 42754837
Alignment:
Q  35 ataaaatcattcttgatatctagcattttcc 65  Q
    |||||||||||||||||||||||||||||||    
T  42754867 ataaaatcattcttgatatctagcattttcc 42754837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 67
Target Start/End: Complemental strand, 7017680 - 7017651
Alignment:
Q  38 aaatcattcttgatatctagcattttcctt 67  Q
    ||||||||||||||||||||||||||||||    
T  7017680 aaatcattcttgatatctagcattttcctt 7017651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 37132505 - 37132477
Alignment:
Q  35 ataaaatcattcttgatatctagcatttt 63  Q
    |||||||||||||||||||||||||||||    
T  37132505 ataaaatcattcttgatatctagcatttt 37132477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 63
Target Start/End: Original strand, 38017173 - 38017201
Alignment:
Q  35 ataaaatcattcttgatatctagcatttt 63  Q
    |||||||||||||||||||||||||||||    
T  38017173 ataaaatcattcttgatatctagcatttt 38017201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 48880787 - 48880721
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcct 66  Q
    |||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||    
T  48880787 tgattattgtgccatgtcattcttgaatttttcttataaaatcattcttgatatctagcattttcct 48880721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 24395176 - 24395241
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcc 65  Q
    |||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||    
T  24395176 tgattattgtgccatgtcattcttgaatcttttttataaaatcattcttgatatctagcattttcc 24395241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 25167716 - 25167651
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcc 65  Q
    |||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||    
T  25167716 tgattattgtgccatgtcattcttgaatttttcttataaaatcattcttgatatctagcattttcc 25167651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 3962183 - 3962250
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcctt 67  Q
    ||||||||||||||||||||||||| |        |||||||||||||||||||||||||||||||||    
T  3962183 tgattattgtgccatgtcattcttggatatttcttataaaatcattcttgatatctagcattttcctt 3962250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 4974595 - 4974532
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcatttt 63  Q
    |||||||||||||||||||||||||||        |||||||||||||||||||||||||||||    
T  4974595 tgattattgtgccatgtcattcttgaatcttttttataaaatcattcttgatatctagcatttt 4974532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 15329479 - 15329546
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcctt 67  Q
    |||||||||||||||||||||||||||        |||||||||||||| ||||||||||||||||||    
T  15329479 tgattattgtgccatgtcattcttgaatatttcttataaaatcattctttatatctagcattttcctt 15329546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 42612016 - 42612082
Alignment:
Q  1 tgattattgtgccatgtcattctt-gaannnnnnnataaaatcattcttgatatctagcattttcct 66  Q
    |||||||||||||||||||||||| ||        ||||||||||||||||||||||||||||||||    
T  42612016 tgattattgtgccatgtcattcttagatctttcttataaaatcattcttgatatctagcattttcct 42612082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 67
Target Start/End: Complemental strand, 15577672 - 15577640
Alignment:
Q  35 ataaaatcattcttgatatctagcattttcctt 67  Q
    |||||||||||||||||||||||||||||||||    
T  15577672 ataaaatcattcttgatatctagcattttcctt 15577640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 66
Target Start/End: Original strand, 35445637 - 35445668
Alignment:
Q  35 ataaaatcattcttgatatctagcattttcct 66  Q
    ||||||||||||||||||||||||||||||||    
T  35445637 ataaaatcattcttgatatctagcattttcct 35445668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 65
Target Start/End: Original strand, 35876484 - 35876514
Alignment:
Q  35 ataaaatcattcttgatatctagcattttcc 65  Q
    |||||||||||||||||||||||||||||||    
T  35876484 ataaaatcattcttgatatctagcattttcc 35876514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 66
Target Start/End: Original strand, 15238627 - 15238655
Alignment:
Q  38 aaatcattcttgatatctagcattttcct 66  Q
    |||||||||||||||||||||||||||||    
T  15238627 aaatcattcttgatatctagcattttcct 15238655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 4892407 - 4892473
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcct 66  Q
    |||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||    
T  4892407 tgattattgtgccatgtcattcttgaatttttcttataaaatcattcttgatatctagcattttcct 4892473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 8145578 - 8145643
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcc 65  Q
    |||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||    
T  8145578 tgattattgtgccatgtcattcttgaatctttcttataaaatcattcttgatatctagcattttcc 8145643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 33584189 - 33584124
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcc 65  Q
    |||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||    
T  33584189 tgattattgtgccatgtcattcttgaatttttcttataaaatcattcttgatatctagcattttcc 33584124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 25398443 - 25398510
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcctt 67  Q
    ||||||||||||||||||||| |||||        |||||||||||||||||||||||||||||||||    
T  25398443 tgattattgtgccatgtcattgttgaatttttcttataaaatcattcttgatatctagcattttcctt 25398510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 3521867 - 3521801
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcct 66  Q
    |||||||||||||||||||||||| ||        ||||||||||||||||||||||||||||||||    
T  3521867 tgattattgtgccatgtcattcttaaatttttcttataaaatcattcttgatatctagcattttcct 3521801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 37321653 - 37321587
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcct 66  Q
    ||||||||||||||| |||||||||||        ||||||||||||||||||||||||||||||||    
T  37321653 tgattattgtgccatttcattcttgaatatttcttataaaatcattcttgatatctagcattttcct 37321587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 6043372 - 6043307
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcc 65  Q
    |||||||||||||||||||||||| ||        |||||||||||||||||||||||||||||||    
T  6043372 tgattattgtgccatgtcattcttaaatttttcttataaaatcattcttgatatctagcattttcc 6043307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 38899583 - 38899520
Alignment:
Q  4 ttattgtgccatgtcattcttgaannnnnnn--ataaaatcattcttgatatctagcattttcc 65  Q
    ||||||||||||||||||||||||         |||||||||||||||||||||||||||||||    
T  38899583 ttattgtgccatgtcattcttgaatttttttttataaaatcattcttgatatctagcattttcc 38899520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 65
Target Start/End: Original strand, 2477876 - 2477906
Alignment:
Q  35 ataaaatcattcttgatatctagcattttcc 65  Q
    |||||||||||||||||||||||||||||||    
T  2477876 ataaaatcattcttgatatctagcattttcc 2477906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 64
Target Start/End: Original strand, 3363019 - 3363048
Alignment:
Q  35 ataaaatcattcttgatatctagcattttc 64  Q
    ||||||||||||||||||||||||||||||    
T  3363019 ataaaatcattcttgatatctagcattttc 3363048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 63
Target Start/End: Original strand, 12614483 - 12614511
Alignment:
Q  35 ataaaatcattcttgatatctagcatttt 63  Q
    |||||||||||||||||||||||||||||    
T  12614483 ataaaatcattcttgatatctagcatttt 12614511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 66
Target Start/End: Complemental strand, 17545504 - 17545476
Alignment:
Q  38 aaatcattcttgatatctagcattttcct 66  Q
    |||||||||||||||||||||||||||||    
T  17545504 aaatcattcttgatatctagcattttcct 17545476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 33380412 - 33380477
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcc 65  Q
    |||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||    
T  33380412 tgattattgtgccatgtcattcttgaatttttcttataaaatcattcttgatatctagcattttcc 33380477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 35160964 - 35161029
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcc 65  Q
    |||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||    
T  35160964 tgattattgtgccatgtcattcttgaatttttcttataaaatcattcttgatatctagcattttcc 35161029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 13355053 - 13355120
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcctt 67  Q
    ||||||||||||||||||||||||| |        |||||||||||||||||||||||||||||||||    
T  13355053 tgattattgtgccatgtcattcttggatctttcttataaaatcattcttgatatctagcattttcctt 13355120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 9293435 - 9293370
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcc 65  Q
    ||||||||||| |||||||||||||||        |||||||||||||||||||||||||||||||    
T  9293435 tgattattgtgtcatgtcattcttgaatctttcttataaaatcattcttgatatctagcattttcc 9293370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 10662093 - 10662158
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcc 65  Q
    ||||||||||| |||||||||||||||        |||||||||||||||||||||||||||||||    
T  10662093 tgattattgtgtcatgtcattcttgaatttttcttataaaatcattcttgatatctagcattttcc 10662158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 22592953 - 22592985
Alignment:
Q  35 ataaaatcattcttgatatctagcattttcctt 67  Q
    |||||||||||||||||||||||||||||||||    
T  22592953 ataaaatcattcttgatatctagcattttcctt 22592985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 23267922 - 23267857
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcc 65  Q
    |||||||||||||||||||||||| ||        |||||||||||||||||||||||||||||||    
T  23267922 tgattattgtgccatgtcattcttaaatttttcttataaaatcattcttgatatctagcattttcc 23267857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 34321017 - 34320961
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnnataaaatcattcttgatatctagcattttcctt 67  Q
    |||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||    
T  34321017 tgattattgtgccatgtcattcttgaa----------aaatcattcttgatatctagcattttcctt 34320961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 65
Target Start/End: Complemental strand, 7475333 - 7475303
Alignment:
Q  35 ataaaatcattcttgatatctagcattttcc 65  Q
    |||||||||||||||||||||||||||||||    
T  7475333 ataaaatcattcttgatatctagcattttcc 7475303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 27847801 - 27847833
Alignment:
Q  35 ataaaatcattcttgatatctagcattttcctt 67  Q
    ||||||| |||||||||||||||||||||||||    
T  27847801 ataaaattattcttgatatctagcattttcctt 27847833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 66
Target Start/End: Original strand, 43331155 - 43331183
Alignment:
Q  38 aaatcattcttgatatctagcattttcct 66  Q
    |||||||||||||||||||||||||||||    
T  43331155 aaatcattcttgatatctagcattttcct 43331183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 17705329 - 17705262
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcctt 67  Q
    ||||||||||| |||||||||||||||        |||||||||||||||||||||||||||||||||    
T  17705329 tgattattgtgtcatgtcattcttgaatctttcttataaaatcattcttgatatctagcattttcctt 17705262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 28675353 - 28675420
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcctt 67  Q
    ||||||||||| |||||||||||||||        |||||||||||||||||||||||||||||||||    
T  28675353 tgattattgtgtcatgtcattcttgaatctttcttataaaatcattcttgatatctagcattttcctt 28675420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 33696902 - 33696969
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcctt 67  Q
    |||||||||||||||||||||||| ||        |||||||||||||||||||||||||||||||||    
T  33696902 tgattattgtgccatgtcattcttaaatctttcttataaaatcattcttgatatctagcattttcctt 33696969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 17175881 - 17175816
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcc 65  Q
    |||||||||| ||||||||||||||||        |||||||||||||||||||||||||||||||    
T  17175881 tgattattgtaccatgtcattcttgaatctttcttataaaatcattcttgatatctagcattttcc 17175816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 29693686 - 29693718
Alignment:
Q  35 ataaaatcattcttgatatctagcattttcctt 67  Q
    |||||||||||||||||||||||||||||||||    
T  29693686 ataaaatcattcttgatatctagcattttcctt 29693718  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 32702445 - 32702477
Alignment:
Q  35 ataaaatcattcttgatatctagcattttcctt 67  Q
    |||||||||||||||||||||||||||||||||    
T  32702445 ataaaatcattcttgatatctagcattttcctt 32702477  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 34238947 - 34238883
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttc 64  Q
    ||||||||||| |||||||||||||||        ||||||||||||||||||||||||||||||    
T  34238947 tgattattgtgtcatgtcattcttgaatcttcttgataaaatcattcttgatatctagcattttc 34238883  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 65
Target Start/End: Complemental strand, 18365399 - 18365369
Alignment:
Q  35 ataaaatcattcttgatatctagcattttcc 65  Q
    |||||||||||||||||||||||||||||||    
T  18365399 ataaaatcattcttgatatctagcattttcc 18365369  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 65
Target Start/End: Complemental strand, 18370663 - 18370633
Alignment:
Q  35 ataaaatcattcttgatatctagcattttcc 65  Q
    |||||||||||||||||||||||||||||||    
T  18370663 ataaaatcattcttgatatctagcattttcc 18370633  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 65
Target Start/End: Complemental strand, 33695151 - 33695121
Alignment:
Q  35 ataaaatcattcttgatatctagcattttcc 65  Q
    |||||||||||||||||||||||||||||||    
T  33695151 ataaaatcattcttgatatctagcattttcc 33695121  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 67
Target Start/End: Complemental strand, 18889479 - 18889451
Alignment:
Q  39 aatcattcttgatatctagcattttcctt 67  Q
    |||||||||||||||||||||||||||||    
T  18889479 aatcattcttgatatctagcattttcctt 18889451  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 67
Target Start/End: Complemental strand, 23290906 - 23290874
Alignment:
Q  35 ataaaatcattcttgatatctagcattttcctt 67  Q
    ||||||||||| |||||||||||||||||||||    
T  23290906 ataaaatcatttttgatatctagcattttcctt 23290874  T

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Target: scaffold0085 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 48054 - 48119
Alignment:
Q  1 tgattattgtgccatgtcattcttgaannnnnnn-ataaaatcattcttgatatctagcattttcc 65  Q
    |||||||||||| ||||||||||||||        |||||||||||||||||||||||||||||||    
T  48054 tgattattgtgctatgtcattcttgaatctttcttataaaatcattcttgatatctagcattttcc 48119  T

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Target: scaffold0204 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 65
Target Start/End: Original strand, 4636 - 4666
Alignment:
Q  35 ataaaatcattcttgatatctagcattttcc 65  Q
    |||||||||||||||||||||||||||||||    
T  4636 ataaaatcattcttgatatctagcattttcc 4666  T

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Target: scaffold0096 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 65
Target Start/End: Original strand, 41250 - 41280
Alignment:
Q  35 ataaaatcattcttgatatctagcattttcc 65  Q
    |||||||||||||||||||||||||||||||    
T  41250 ataaaatcattcttgatatctagcattttcc 41280  T

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Target: scaffold0471 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 63
Target Start/End: Original strand, 13082 - 13110
Alignment:
Q  35 ataaaatcattcttgatatctagcatttt 63  Q
    |||||||||||||||||||||||||||||    
T  13082 ataaaatcattcttgatatctagcatttt 13110  T

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