View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9341_high_6 (Length: 318)
Name: NF9341_high_6
Description: NF9341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9341_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 308
Target Start/End: Original strand, 10128342 - 10128631
Alignment:
| Q |
19 |
gtaaataccaaacccaatcaaccaaaaattggtacccttctattttagtccaaggtctttgaccacaaactgtttcaagaaacacagcaccaagtccata |
118 |
Q |
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| T |
10128342 |
gtaaataccaaacccaatcaaccaaaaattggtacccttcaattttagtccaaggtctttgaccacaaactgtttcaagaaacacagcaccaagtccata |
10128441 |
T |
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| Q |
119 |
tacatctgattctcttgaagcttttcctgtgtggaaacattccggtgctatgtatcccattgtaccttgtactccttctaattctgcatacgatgttttt |
218 |
Q |
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| T |
10128442 |
tacatctgattctcttgaagcttttcctgtgtggaaacattccggtgctatgtatcccattgtaccttgtactccttctaattctgcatacgatgttttt |
10128541 |
T |
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| Q |
219 |
tcattctctagtgcacgtgctaagccgaaatcacctaaacgtgcattgaaatcaacgtctagcattatgttgcttgctttcaggtctctg |
308 |
Q |
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| T |
10128542 |
tcattctctagtgcacgtgctaagccgaaatcacctaaacgtgcattgaaatcaacgtctagcattatgttgcttgctttcaggtctctg |
10128631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 205 - 304
Target Start/End: Complemental strand, 5031368 - 5031269
Alignment:
| Q |
205 |
catacgatgttttttcattctctagtgcacgtgctaagccgaaatcacctaaacgtgcattgaaatcaacgtctagcattatgttgcttgctttcaggtc |
304 |
Q |
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| T |
5031368 |
cataggatgttttttcattctctactgcatatgctgatcccaaatcacctaaacttgcattataattcttgtcaagcattatattgcttgctttaaggtc |
5031269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 173
Target Start/End: Complemental strand, 5031450 - 5031397
Alignment:
| Q |
120 |
acatctgattctcttgaagcttttcctgtgtggaaacattccggtgctatgtat |
173 |
Q |
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| T |
5031450 |
acatctggttctcttgtagctcttcctatgtggaaacattctggtgccatgtat |
5031397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 308
Target Start/End: Complemental strand, 50886718 - 50886598
Alignment:
| Q |
187 |
gtactccttctaattctgcatacgatgttttttcattctctagtgcacgtgctaagccgaaatcacctaaacgtgcattgaaatcaacgtctagcattat |
286 |
Q |
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| T |
50886718 |
gtacaccttctacttctgcatatgttgctttttccttctctaatgtacgcactaacctaaaatcacc-aaacatgcattgaaatcggggtccaacattat |
50886620 |
T |
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| Q |
287 |
gttgcttgctttcaggtctctg |
308 |
Q |
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| T |
50886619 |
tttgcttgctttcaagtctctg |
50886598 |
T |
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