View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9341_low_1 (Length: 824)
Name: NF9341_low_1
Description: NF9341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9341_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 738; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 738; E-Value: 0
Query Start/End: Original strand, 11 - 805
Target Start/End: Complemental strand, 6314127 - 6313331
Alignment:
| Q |
11 |
agattatactgctgcaatgaagaaaatgtgctgtctagtgttggaattaatggctgatgggttggggattgagccaaagaatgtgttaagcaggttattg |
110 |
Q |
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| T |
6314127 |
agattatattgctgcaatgaagaaaatgtgctgtctagtgttggaattaatggctgatgggttggggattgagccaaagaatgtgttaagcaggttattg |
6314028 |
T |
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| Q |
111 |
aaagatgagaaaagtgattcttgtttcagaattaaccattacccaccgtgccctgaggtgcaacaagcagcattaaatggaaggaatttgcttgggtttg |
210 |
Q |
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| T |
6314027 |
aaagatgagaaaagtgattcttgtttcagaattaaccattacccaccgtgccctgaggtgcaacaagcagcattgaatggaaggaatttgcttgggtttg |
6313928 |
T |
|
| Q |
211 |
gggagcatacagacccacaagtcatttctgtcttgagatctaatagcacatcaggactgcaaatctgtctcactgatggaacttgggtttcagttccacc |
310 |
Q |
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| T |
6313927 |
gggagcatacagacccacaagtcatttctgtcttgagatctaatagcacatcaggactgcaaatctgtctcactgatggaacttgggtttcagttccacc |
6313828 |
T |
|
| Q |
311 |
tgatcacacttcttttttcatcaatgttggtgatactcttcaggttcgtagttttcgatatcaattagatatgttattgatgcgaaatagctactacata |
410 |
Q |
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| T |
6313827 |
tgatcacacttcttttttcatcaatgttggtgatactcttcaggttcgtagttttcgatatcgattagatatgttgttgatgcaaaatagctactacata |
6313728 |
T |
|
| Q |
411 |
ctttgtcgataataacttattcttttaacttttctttattcacaagattcgaattcaagacctttctcaacatatacgagtcatgttaccgagtgtcttt |
510 |
Q |
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| T |
6313727 |
ctttgtcgataataacttattcttttaacttttctttattcacaagactcgaattcaacacctttctcaacatatacgagtcatgttaccgagtgtcttt |
6313628 |
T |
|
| Q |
511 |
aagacgctgactaatgttgatcttttaagttatttcaattattgagaccattcgatcaattcaaagactaacatcaaacttaatcaagttgtaaatcgta |
610 |
Q |
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| T |
6313627 |
aagacactgactaatgtcgatcttttaagttatttcaattattgagaccattcgatcaattcaaagactaacatcaaacttaatcaagttgcaaatcgta |
6313528 |
T |
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| Q |
611 |
gagaatctaagtctctcgattatttttctctttttaaatgtggtgttgacactagtgtcactaaactttttagtaccaaaaaagaaacattcccacatgt |
710 |
Q |
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| T |
6313527 |
gagaatctgagtctctcgattatttttctctttttaaatgtggtgttgacactagtgtcactaaactttttagtaccaaagaagaaacattcccacatgt |
6313428 |
T |
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| Q |
711 |
atttaatttttgaagtgggggtctgttttcaatatgaaacattctaacttggttatgtc--gtgtgtgtgggttgaaattgatgcaggtattgacta |
805 |
Q |
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| T |
6313427 |
atttaatttttgaagtgggggtctgttttcaatatgaaacattctaacttggttatgtcatgtgtgtgtgggttgaaattgatgcaggtattgacta |
6313331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 285 - 355
Target Start/End: Complemental strand, 29877324 - 29877254
Alignment:
| Q |
285 |
gatggaacttgggtttcagttccacctgatcacacttcttttttcatcaatgttggtgatactcttcaggt |
355 |
Q |
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| T |
29877324 |
gatggaagttggatttcagtcccacctgatcatagatccttcttcatcaatgttggtgattctcttcaggt |
29877254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 9e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 195 - 343
Target Start/End: Original strand, 38545355 - 38545503
Alignment:
| Q |
195 |
aatttgcttgggtttggggagcatacagacccacaagtcatttctgtcttgagatctaatagcacatcaggactgcaaatctgtctcactgatggaactt |
294 |
Q |
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| T |
38545355 |
aatttgattggatttggggagcatactgacccacagataatatctgtcctaaggtctaataatgcatcaggactgcaaatttgtctcagagatgggactt |
38545454 |
T |
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| Q |
295 |
gggtttcagttccacctgatcacacttcttttttcatcaatgttggtga |
343 |
Q |
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| T |
38545455 |
gggtttcaatcccacctgatcacacttctttcttcataagtgttggtga |
38545503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 136
Target Start/End: Original strand, 38545217 - 38545302
Alignment:
| Q |
51 |
ttggaattaatggctgatgggttggggattgagccaaagaatgtgttaagcaggttattgaaagatgagaaaagtgattcttgttt |
136 |
Q |
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| T |
38545217 |
ttggaattaatggcagatggattgaggattgaaccaaggaatgtgtttagcagattggtgagagatgagagaagtgattcttgttt |
38545302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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