View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9341_low_12 (Length: 324)
Name: NF9341_low_12
Description: NF9341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9341_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 20 - 310
Target Start/End: Original strand, 50227955 - 50228244
Alignment:
| Q |
20 |
atgcacaaaattttctttttattattagaataataataaaactgcatgtacaaagtctgaccaagaattgaatatttttgttaggaagaaacataacata |
119 |
Q |
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| T |
50227955 |
atgcacaaaattttctttttattattaaaatcataataaaactgcatgtacaaagtctgaccaagaattgaatatttttgttaggaagaaacataatata |
50228054 |
T |
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| Q |
120 |
tacaattaacatannnnnnnggcatatatgaagtttgcgcaaaagtaactgataaatacctagagcatcataaaatattcttgggtatgattttttatat |
219 |
Q |
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| T |
50228055 |
tacaattaacatatttttt-ggcatatatgaagtttgcgcaacagtaactgataaatacctagagcatcatgaaatattcttgggtatggttttttatat |
50228153 |
T |
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| Q |
220 |
ccaacctctgatgatataacgattgcatcaaatctgatatgaaaaccaaaaattgaaacattaaaaaccatgtaaagatacactcatcaga |
310 |
Q |
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| T |
50228154 |
ccaacctctgatgatataacaattgcatcaaatctgatatgaaaaccaaaaattgaaacattaaaaaccatgtaaagatacactcatcaga |
50228244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 71 - 310
Target Start/End: Complemental strand, 14694660 - 14694421
Alignment:
| Q |
71 |
aaagtctgaccaagaattgaatatttttgttaggaagaaacataacatatacaattaacatannnnnnnggcatatatgaagtttgcgcaaaagtaactg |
170 |
Q |
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||||| ||||||||||||||||| |||| |||| | ||||| ||||||||||||||||| ||||||||||||||||| |||| | ||||| |
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| T |
14694660 |
aaagtttgaccaagaattgaatacttttcttagaacaaaacagaacatatacaattaacaatcttttctggcatatatgaagtttgggcaacattaacta |
14694561 |
T |
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| Q |
171 |
ataaatacctagagcatcataaaatattcttgggtatgattttttatatccaacctctgatgatataacgattgcatcaaatctgatatgaaaaccaaaa |
270 |
Q |
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| T |
14694560 |
ataaatacctagagcggattgaaatatttttgggtctggtttttcatatccaacctctgatgatataatgactgcatcaaatctgatatgaaaaccaaaa |
14694461 |
T |
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| Q |
271 |
attgaaacattaaaaaccatgtaaagatacactcatcaga |
310 |
Q |
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| T |
14694460 |
aatgcaacattaaaaaccatgttaagatacattcatcaga |
14694421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 147 - 310
Target Start/End: Original strand, 17653904 - 17654067
Alignment:
| Q |
147 |
atgaagtttgcgcaaaagtaactgataaatacctagagcatcataaaatattcttgggtatgattttttatatccaacctctgatgatataacgattgca |
246 |
Q |
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||||||||||| ||| |||| || | |||||||||||||| | | |||||||||| ||| || ||||| ||||||||||||||||||||||| || ||| |
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| T |
17653904 |
atgaagtttgcacaacagtagctaagaaatacctagagcagcttgaaatattctttggtctggtttttcatatccaacctctgatgatataatgacagca |
17654003 |
T |
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| Q |
247 |
tcaaatctgatatgaaaaccaaaaattgaaacattaaaaaccatgtaaagatacactcatcaga |
310 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||| |
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| T |
17654004 |
tcaaatctgatatgaaaaccaaaaaacgaaacattaaaaaccatgtaatgatacattcatcaga |
17654067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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