View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9341_low_17 (Length: 261)
Name: NF9341_low_17
Description: NF9341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9341_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 7e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 70 - 253
Target Start/End: Original strand, 54649047 - 54649230
Alignment:
| Q |
70 |
ttcaacaatccctcgttgttactcgtaaactcacaattctctcgttaaattgaatctttggtttgtttgagaaaagttagtgatccatttgtctaaattt |
169 |
Q |
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| T |
54649047 |
ttcaacaatccctcgttgttactcgtaaactcacaattctctcgttaaattgaatctttggtttgtttgagaaaagttagtgatccatttgtctaaattt |
54649146 |
T |
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| Q |
170 |
tattcaacctttatttgtatgagccaagtcaataatgtgattattggattccaatgttttttcaaatatctatgatagtattat |
253 |
Q |
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| T |
54649147 |
tattcaacctttatttgtatgagccatgtcaataatgtgattattggattccaatgttttttcaaatatctatgatattattat |
54649230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 54648960 - 54649017
Alignment:
| Q |
16 |
tatttttcttttataaaacctttaatgcatgaatggacacaaagtcgtgttgttttcaa |
74 |
Q |
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| T |
54648960 |
tatttttcttttataaa-cctttaatgcatgaatggacacaaagtcatgttgttttcaa |
54649017 |
T |
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