View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9341_low_20 (Length: 256)

Name: NF9341_low_20
Description: NF9341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9341_low_20
NF9341_low_20
[»] chr3 (4 HSPs)
chr3 (31-181)||(10566023-10566173)
chr3 (110-164)||(43838824-43838878)
chr3 (111-166)||(47944335-47944390)
chr3 (110-164)||(3941812-3941866)
[»] chr2 (8 HSPs)
chr2 (112-164)||(29926889-29926941)
chr2 (115-164)||(13478771-13478820)
chr2 (112-144)||(1090195-1090227)
chr2 (114-164)||(21603678-21603728)
chr2 (115-164)||(28779822-28779871)
chr2 (114-167)||(43191974-43192027)
chr2 (112-144)||(6923757-6923789)
chr2 (112-144)||(28779733-28779765)
[»] chr1 (10 HSPs)
chr1 (110-173)||(32087676-32087739)
chr1 (110-164)||(3450519-3450573)
chr1 (114-166)||(32743329-32743381)
chr1 (111-166)||(9553083-9553138)
chr1 (115-166)||(12436942-12436993)
chr1 (115-161)||(34177333-34177379)
chr1 (119-164)||(33746391-33746436)
chr1 (120-164)||(12238582-12238626)
chr1 (120-164)||(33745197-33745241)
chr1 (120-164)||(33746861-33746905)
[»] chr8 (7 HSPs)
chr8 (110-151)||(21600453-21600494)
chr8 (111-163)||(7681012-7681064)
chr8 (111-142)||(41303174-41303205)
chr8 (110-164)||(36469560-36469614)
chr8 (111-164)||(29908950-29909003)
chr8 (110-166)||(1249276-1249331)
chr8 (110-142)||(13910529-13910561)
[»] chr4 (13 HSPs)
chr4 (111-150)||(40407652-40407691)
chr4 (111-166)||(46805805-46805860)
chr4 (110-164)||(37687146-37687200)
chr4 (111-164)||(36218544-36218597)
chr4 (111-164)||(46217209-46217262)
chr4 (112-164)||(37197585-37197637)
chr4 (110-164)||(13834510-13834564)
chr4 (114-164)||(14810443-14810493)
chr4 (112-166)||(21241789-21241843)
chr4 (110-144)||(40836918-40836952)
chr4 (115-164)||(13834383-13834432)
chr4 (111-164)||(38080937-38080990)
chr4 (111-164)||(46804807-46804860)
[»] chr6 (6 HSPs)
chr6 (114-164)||(21021094-21021144)
chr6 (106-163)||(9762615-9762672)
chr6 (111-144)||(22260415-22260448)
chr6 (112-164)||(21020904-21020956)
chr6 (110-162)||(31803958-31804010)
chr6 (111-167)||(33551083-33551139)
[»] chr7 (6 HSPs)
chr7 (111-164)||(23474559-23474612)
chr7 (111-166)||(19303558-19303613)
chr7 (111-164)||(10228752-10228805)
chr7 (111-164)||(23441505-23441558)
chr7 (109-162)||(39317415-39317468)
chr7 (115-143)||(8062749-8062777)
[»] chr5 (6 HSPs)
chr5 (111-164)||(23159081-23159134)
chr5 (110-167)||(33598334-33598391)
chr5 (120-164)||(12403298-12403342)
chr5 (111-164)||(1276742-1276795)
chr5 (110-166)||(34033232-34033287)
chr5 (120-164)||(34034840-34034884)
[»] scaffold0005 (1 HSPs)
scaffold0005 (114-164)||(29235-29285)


Alignment Details
Target: chr3 (Bit Score: 94; Significance: 6e-46; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 31 - 181
Target Start/End: Original strand, 10566023 - 10566173
Alignment:
Q  31 ttaaagagaaggtatattaatttcttttcacatggttataacnnnnnnntaatagtcattttgatttctgaatgaataataatgtatcaaaattttaaaa 130  Q
    ||||||||||||||| ||||||||||||||||||||| ||||       ||||||||||||| |||||||||||| ||||||||||||||||||| ||||    
T  10566023 ttaaagagaaggtattttaatttcttttcacatggttgtaacaaaaaggtaatagtcattttaatttctgaatgagtaataatgtatcaaaatttcaaaa 10566122  T
Q  131 tagtcattgattgtccatttcattagtcaaaataattattgactatcatat 181  Q
    || |||||||||||||| ||| |||||||||||||||||||| ||||||||    
T  10566123 taatcattgattgtccacttcgttagtcaaaataattattgattatcatat 10566173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 164
Target Start/End: Complemental strand, 43838878 - 43838824
Alignment:
Q  110 taatgtatcaaaattttaaaatagtcattgattgtccatttcattagtcaaaata 164  Q
    ||||||||||||||||||||||||||||||||||| |||||  ||||||||||||    
T  43838878 taatgtatcaaaattttaaaatagtcattgattgtgcattttgttagtcaaaata 43838824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 47944335 - 47944390
Alignment:
Q  111 aatgtatcaaaattttaaaatagtcattgattgtccatttcattagtcaaaataat 166  Q
    |||||||| |||||||||||||||| |||||||| || ||  ||||||||||||||    
T  47944335 aatgtatcgaaattttaaaatagtctttgattgtgcactttgttagtcaaaataat 47944390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 164
Target Start/End: Complemental strand, 3941866 - 3941812
Alignment:
Q  110 taatgtatcaaaattttaaaatagtcattgattgtccatttcattagtcaaaata 164  Q
    |||||||||||||||||||||||||| || ||||  |||||  ||||||||||||    
T  3941866 taatgtatcaaaattttaaaatagtccttaattgaacattttgttagtcaaaata 3941812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 164
Target Start/End: Complemental strand, 29926941 - 29926889
Alignment:
Q  112 atgtatcaaaattttaaaatagtcattgattgtccatttcattagtcaaaata 164  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  29926941 atgtatcaaaattttaaaatagtcaatgattgtgcatttcattagtcaaaata 29926889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 164
Target Start/End: Complemental strand, 13478820 - 13478771
Alignment:
Q  115 tatcaaaattttaaaatagtcattgattgtccatttcattagtcaaaata 164  Q
    ||||||||||||||||||||  |||||||| ||||| |||||||||||||    
T  13478820 tatcaaaattttaaaatagtttttgattgtgcattttattagtcaaaata 13478771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 144
Target Start/End: Original strand, 1090195 - 1090227
Alignment:
Q  112 atgtatcaaaattttaaaatagtcattgattgt 144  Q
    |||||||||||||||||||||||||||||||||    
T  1090195 atgtatcaaaattttaaaatagtcattgattgt 1090227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 164
Target Start/End: Complemental strand, 21603728 - 21603678
Alignment:
Q  114 gtatcaaaattttaaaatagtcattgattgtccatttcattagtcaaaata 164  Q
    |||||||||||| ||||||||| ||||||||||| ||  ||||||||||||    
T  21603728 gtatcaaaatttcaaaatagtccttgattgtccactttgttagtcaaaata 21603678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 115 - 164
Target Start/End: Complemental strand, 28779871 - 28779822
Alignment:
Q  115 tatcaaaattttaaaatagtcattgattgtccatttcattagtcaaaata 164  Q
    |||||||||||||||||||| ||||||||| || |  |||||||||||||    
T  28779871 tatcaaaattttaaaatagttattgattgtacactatattagtcaaaata 28779822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 114 - 167
Target Start/End: Complemental strand, 43192027 - 43191974
Alignment:
Q  114 gtatcaaaattttaaaatagtcattgattgtccatttcattagtcaaaataatt 167  Q
    |||||||||||||||||||||  || ||||| ||||| |||| |||||||||||    
T  43192027 gtatcaaaattttaaaatagttttttattgtacattttattaatcaaaataatt 43191974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 144
Target Start/End: Original strand, 6923757 - 6923789
Alignment:
Q  112 atgtatcaaaattttaaaatagtcattgattgt 144  Q
    |||||||||||||||||||||||| ||||||||    
T  6923757 atgtatcaaaattttaaaatagtccttgattgt 6923789  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 144
Target Start/End: Original strand, 28779733 - 28779765
Alignment:
Q  112 atgtatcaaaattttaaaatagtcattgattgt 144  Q
    |||||||||||||||||||||||| ||||||||    
T  28779733 atgtatcaaaattttaaaatagtccttgattgt 28779765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 110 - 173
Target Start/End: Original strand, 32087676 - 32087739
Alignment:
Q  110 taatgtatcaaaattttaaaatagtcattgattgtccatttcattagtcaaaataattattgac 173  Q
    |||||||| ||||||| ||| |||||||||||||| || ||||||||||||||||||| |||||    
T  32087676 taatgtataaaaatttcaaagtagtcattgattgtgcacttcattagtcaaaataatttttgac 32087739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 110 - 164
Target Start/End: Complemental strand, 3450573 - 3450519
Alignment:
Q  110 taatgtatcaaaattttaaaatagtcattgattgtccatttcattagtcaaaata 164  Q
    |||||||||||||||||||||||||  ||||||| |||||| |||||||||||||    
T  3450573 taatgtatcaaaattttaaaatagttgttgattgaccattttattagtcaaaata 3450519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 166
Target Start/End: Complemental strand, 32743381 - 32743329
Alignment:
Q  114 gtatcaaaattttaaaatagtcattgattgtccatttcattagtcaaaataat 166  Q
    ||||||||||||||||||| || |||||||| |||||| ||||||||||||||    
T  32743381 gtatcaaaattttaaaataatctttgattgtacatttcgttagtcaaaataat 32743329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 9553138 - 9553083
Alignment:
Q  111 aatgtatcaaaattttaaaatagtcattgattgtccatttcattagtcaaaataat 166  Q
    ||||||||||| |||||||||||||||||||||   |||| || ||||||||||||    
T  9553138 aatgtatcaaacttttaaaatagtcattgattgagtattttataagtcaaaataat 9553083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 12436993 - 12436942
Alignment:
Q  115 tatcaaaattttaaaatagtcattgattgtccatttcattagtcaaaataat 166  Q
    ||||||||||| |||||||| ||||||||| |||| ||||| ||||||||||    
T  12436993 tatcaaaatttcaaaatagttattgattgtgcattccattaatcaaaataat 12436942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 161
Target Start/End: Original strand, 34177333 - 34177379
Alignment:
Q  115 tatcaaaattttaaaatagtcattgattgtccatttcattagtcaaa 161  Q
    ||||||||||| ||||||||| ||||||||||||||  |||||||||    
T  34177333 tatcaaaatttcaaaatagtccttgattgtccattttgttagtcaaa 34177379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 164
Target Start/End: Original strand, 33746391 - 33746436
Alignment:
Q  119 aaaattttaaaatagtcattgattgtccatttcattagtcaaaata 164  Q
    |||||| ||||||||||||||||||| || || |||||||||||||    
T  33746391 aaaattgtaaaatagtcattgattgtacacttaattagtcaaaata 33746436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 164
Target Start/End: Complemental strand, 12238626 - 12238582
Alignment:
Q  120 aaattttaaaatagtcattgattgtccatttcattagtcaaaata 164  Q
    ||||||||||||||||||||||||| ||||| || || |||||||    
T  12238626 aaattttaaaatagtcattgattgtgcattttatgagccaaaata 12238582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 164
Target Start/End: Original strand, 33745197 - 33745241
Alignment:
Q  120 aaattttaaaatagtcattgattgtccatttcattagtcaaaata 164  Q
    ||||| ||||||||||||||||||| || || |||||||||||||    
T  33745197 aaattgtaaaatagtcattgattgtacacttaattagtcaaaata 33745241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 164
Target Start/End: Original strand, 33746861 - 33746905
Alignment:
Q  120 aaattttaaaatagtcattgattgtccatttcattagtcaaaata 164  Q
    ||||| ||||||||||||||||||| || || |||||||||||||    
T  33746861 aaattgtaaaatagtcattgattgtacacttaattagtcaaaata 33746905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 151
Target Start/End: Original strand, 21600453 - 21600494
Alignment:
Q  110 taatgtatcaaaattttaaaatagtcattgattgtccatttc 151  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  21600453 taatgtatcaaaattttaaaatagtcattgattgtgcatttc 21600494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 163
Target Start/End: Complemental strand, 7681064 - 7681012
Alignment:
Q  111 aatgtatcaaaattttaaaatagtcattgattgtccatttcattagtcaaaat 163  Q
    ||||||||||||||||||||||||  |||||||| |||||| |||||||||||    
T  7681064 aatgtatcaaaattttaaaatagtatttgattgtgcatttcgttagtcaaaat 7681012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 142
Target Start/End: Complemental strand, 41303205 - 41303174
Alignment:
Q  111 aatgtatcaaaattttaaaatagtcattgatt 142  Q
    ||||||||||||||||||||||||||||||||    
T  41303205 aatgtatcaaaattttaaaatagtcattgatt 41303174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 164
Target Start/End: Complemental strand, 36469614 - 36469560
Alignment:
Q  110 taatgtatcaaaattttaaaatagtcattgattgtccatttcattagtcaaaata 164  Q
    |||||||||||||||||||||||||| || ||||| ||||||  ||||| |||||    
T  36469614 taatgtatcaaaattttaaaatagtccttaattgtgcatttcgctagtccaaata 36469560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 29908950 - 29909003
Alignment:
Q  111 aatgtatcaaaattttaaaatagtcattgattgtccatttcattagtcaaaata 164  Q
    |||||||  ||||||||||||||| ||||||||| |||||  ||||||||||||    
T  29908950 aatgtattgaaattttaaaatagttattgattgtgcatttggttagtcaaaata 29909003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 166
Target Start/End: Complemental strand, 1249331 - 1249276
Alignment:
Q  110 taatgtatcaaaattttaaaatagtcattgattgtccatttcattagtcaaaataat 166  Q
    |||||||| ||||||| ||| | |||||||||||| |||||| ||||||||||||||    
T  1249331 taatgtattaaaatttcaaatt-gtcattgattgtacatttcgttagtcaaaataat 1249276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 13910561 - 13910529
Alignment:
Q  110 taatgtatcaaaattttaaaatagtcattgatt 142  Q
    |||||||||||||||||||||| ||||||||||    
T  13910561 taatgtatcaaaattttaaaattgtcattgatt 13910529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 150
Target Start/End: Complemental strand, 40407691 - 40407652
Alignment:
Q  111 aatgtatcaaaattttaaaatagtcattgattgtccattt 150  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  40407691 aatgtatcaaaattttaaaatagtcattgattgtgcattt 40407652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 46805805 - 46805860
Alignment:
Q  111 aatgtatcaaaattttaaaatagtcattgattgtccatttcattagtcaaaataat 166  Q
    ||||||| ||||||||||| |||||||||||||| || ||| ||||||||||||||    
T  46805805 aatgtattaaaattttaaagtagtcattgattgtacacttcgttagtcaaaataat 46805860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 110 - 164
Target Start/End: Original strand, 37687146 - 37687200
Alignment:
Q  110 taatgtatcaaaattttaaaatagtcattgattgtccatttcattagtcaaaata 164  Q
    ||||||||||||| ||||||||||||||||||||| ||||||  ||||| |||||    
T  37687146 taatgtatcaaaaatttaaaatagtcattgattgtgcatttcgctagtccaaata 37687200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 36218544 - 36218597
Alignment:
Q  111 aatgtatcaaaattttaaaatagtcattgattgtccatttcattagtcaaaata 164  Q
    |||||||||||| ||||||||||| ||||||||| || ||||||||| ||||||    
T  36218544 aatgtatcaaaaatttaaaatagttattgattgtgcacttcattagttaaaata 36218597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 164
Target Start/End: Complemental strand, 46217262 - 46217209
Alignment:
Q  111 aatgtatcaaaattttaaaatagtcattgattgtccatttcattagtcaaaata 164  Q
    |||| ||||||||| |||||||||||||||||||  ||||| ||||||||||||    
T  46217262 aatgcatcaaaattataaaatagtcattgattgtgtatttcgttagtcaaaata 46217209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 164
Target Start/End: Complemental strand, 37197637 - 37197585
Alignment:
Q  112 atgtatcaaaattttaaaatagtcattgattgtccatttcattagtcaaaata 164  Q
    |||||||||| ||||||||||||| |||||||  |||||| ||||||||||||    
T  37197637 atgtatcaaagttttaaaatagtccttgattgggcatttcgttagtcaaaata 37197585  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 164
Target Start/End: Complemental strand, 13834564 - 13834510
Alignment:
Q  110 taatgtatcaaaattttaaaatagtcattgattgtccatttcattagtcaaaata 164  Q
    |||||||| |||||||||||||||||  ||||| | || ||||||||||||||||    
T  13834564 taatgtattaaaattttaaaatagtctctgattttacacttcattagtcaaaata 13834510  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 164
Target Start/End: Complemental strand, 14810493 - 14810443
Alignment:
Q  114 gtatcaaaattttaaaatagtcattgattgtccatttcattagtcaaaata 164  Q
    |||||||||||| ||||||||  ||||||||||| || |||||||||||||    
T  14810493 gtatcaaaatttcaaaatagttcttgattgtccactttattagtcaaaata 14810443  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 166
Target Start/End: Complemental strand, 21241843 - 21241789
Alignment:
Q  112 atgtatcaaaattttaaaatagtcattgattgtccatttcattagtcaaaataat 166  Q
    |||||||||||||||||||||||  | |||||| || ||||||| ||||||||||    
T  21241843 atgtatcaaaattttaaaatagttttcgattgtgcacttcattaatcaaaataat 21241789  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 144
Target Start/End: Complemental strand, 40836952 - 40836918
Alignment:
Q  110 taatgtatcaaaattttaaaatagtcattgattgt 144  Q
    |||||||| ||||||||||||||||||||||||||    
T  40836952 taatgtattaaaattttaaaatagtcattgattgt 40836918  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 13834383 - 13834432
Alignment:
Q  115 tatcaaaattttaaaatagtcattgattgtccatttcattagtcaaaata 164  Q
    ||||||||||||||||||||| |||||||| || ||  ||||||||||||    
T  13834383 tatcaaaattttaaaatagtccttgattgtgcactttgttagtcaaaata 13834432  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 164
Target Start/End: Complemental strand, 38080990 - 38080937
Alignment:
Q  111 aatgtatcaaaattttaaaatagtcattgattgtccatttcattagtcaaaata 164  Q
    |||||||||||||||||||||||||   |||| | |||||| ||||||||||||    
T  38080990 aatgtatcaaaattttaaaatagtctacgattatgcatttcgttagtcaaaata 38080937  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 46804807 - 46804860
Alignment:
Q  111 aatgtatcaaaattttaaaatagtcattgattgtccatttcattagtcaaaata 164  Q
    |||||||||||||||||||||||||  ||||||| || ||  ||||||||||||    
T  46804807 aatgtatcaaaattttaaaatagtctctgattgtacactttgttagtcaaaata 46804860  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 114 - 164
Target Start/End: Complemental strand, 21021144 - 21021094
Alignment:
Q  114 gtatcaaaattttaaaatagtcattgattgtccatttcattagtcaaaata 164  Q
    ||||||||||||||||||||| ||||||| | ||||| |||||||||||||    
T  21021144 gtatcaaaattttaaaatagttattgattatgcattttattagtcaaaata 21021094  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 163
Target Start/End: Complemental strand, 9762672 - 9762615
Alignment:
Q  106 ataataatgtatcaaaattttaaaatagtcattgattgtccatttcattagtcaaaat 163  Q
    |||||||||||||||||||||||||||||  |||||||| || |  ||||||||||||    
T  9762672 ataataatgtatcaaaattttaaaatagtttttgattgtgcactatattagtcaaaat 9762615  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 144
Target Start/End: Original strand, 22260415 - 22260448
Alignment:
Q  111 aatgtatcaaaattttaaaatagtcattgattgt 144  Q
    ||||||||||||||||||||||||||||||||||    
T  22260415 aatgtatcaaaattttaaaatagtcattgattgt 22260448  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 164
Target Start/End: Original strand, 21020904 - 21020956
Alignment:
Q  112 atgtatcaaaattttaaaatagtcattgattgtccatttcattagtcaaaata 164  Q
    |||||||||||||||||||||||||| |||| | |||||  ||||||||||||    
T  21020904 atgtatcaaaattttaaaatagtcatcgattatacatttttttagtcaaaata 21020956  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 162
Target Start/End: Original strand, 31803958 - 31804010
Alignment:
Q  110 taatgtatcaaaattttaaaatagtcattgattgtccatttcattagtcaaaa 162  Q
    ||||||||||||||||||||||| |  |||||||| |||||| ||||||||||    
T  31803958 taatgtatcaaaattttaaaataatttttgattgttcatttcgttagtcaaaa 31804010  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 167
Target Start/End: Complemental strand, 33551139 - 33551083
Alignment:
Q  111 aatgtatcaaaattttaaaatagtcattgattgtccatttcattagtcaaaataatt 167  Q
    |||||||||||||||||||||| |   ||||||| |||||| |||||||||||||||    
T  33551139 aatgtatcaaaattttaaaatattatctgattgtgcatttcgttagtcaaaataatt 33551083  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 23474559 - 23474612
Alignment:
Q  111 aatgtatcaaaattttaaaatagtcattgattgtccatttcattagtcaaaata 164  Q
    |||||||||||||||||||||||| ||||||||| || ||| ||| ||||||||    
T  23474559 aatgtatcaaaattttaaaatagttattgattgtgcacttcgttaatcaaaata 23474612  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 19303613 - 19303558
Alignment:
Q  111 aatgtatcaaaattttaaaatagtcattgattgtccatttcattagtcaaaataat 166  Q
    |||||||||||||||||||||| ||||||||| |  | ||| ||||||||||||||    
T  19303613 aatgtatcaaaattttaaaatactcattgattattaacttcgttagtcaaaataat 19303558  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 10228752 - 10228805
Alignment:
Q  111 aatgtatcaaaattttaaaatagtcattgattgtccatttcattagtcaaaata 164  Q
    |||||||| |||||| ||||||||| |||||||| || ||| ||||||||||||    
T  10228752 aatgtatcgaaatttcaaaatagtctttgattgtgcaattcgttagtcaaaata 10228805  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 23441505 - 23441558
Alignment:
Q  111 aatgtatcaaaattttaaaatagtcattgattgtccatttcattagtcaaaata 164  Q
    |||||||| ||||||||||||||| ||||||||| || ||| ||| ||||||||    
T  23441505 aatgtatcgaaattttaaaatagttattgattgtgcacttcgttaatcaaaata 23441558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 162
Target Start/End: Complemental strand, 39317468 - 39317415
Alignment:
Q  109 ataatgtatcaaaattttaaaatagtcattgattgtccatttcattagtcaaaa 162  Q
    |||||| ||||||| |||||||||||||||||||||  ||||  ||||||||||    
T  39317468 ataatgcatcaaaaatttaaaatagtcattgattgtatatttggttagtcaaaa 39317415  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 143
Target Start/End: Original strand, 8062749 - 8062777
Alignment:
Q  115 tatcaaaattttaaaatagtcattgattg 143  Q
    |||||||||||||||||||||||||||||    
T  8062749 tatcaaaattttaaaatagtcattgattg 8062777  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 23159081 - 23159134
Alignment:
Q  111 aatgtatcaaaattttaaaatagtcattgattgtccatttcattagtcaaaata 164  Q
    ||||||||||||||||||||||||  |||||||| |||||| ||||| ||||||    
T  23159081 aatgtatcaaaattttaaaatagtatttgattgtgcatttcgttagtaaaaata 23159134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 167
Target Start/End: Complemental strand, 33598391 - 33598334
Alignment:
Q  110 taatgtatcaaaattttaaaatagtcattgattgtccatttcattagtcaaaataatt 167  Q
    |||||||||||||||||||||||||| |||||| | || |  ||||||||||||||||    
T  33598391 taatgtatcaaaattttaaaatagtcgttgattatacactatattagtcaaaataatt 33598334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 164
Target Start/End: Complemental strand, 12403342 - 12403298
Alignment:
Q  120 aaattttaaaatagtcattgattgtccatttcattagtcaaaata 164  Q
    |||||||||||||||| |||||||||||||| |||| ||||||||    
T  12403342 aaattttaaaatagtctttgattgtccattttattactcaaaata 12403298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 164
Target Start/End: Complemental strand, 1276795 - 1276742
Alignment:
Q  111 aatgtatcaaaattttaaaatagtcattgattgtccatttcattagtcaaaata 164  Q
    |||| |||||||||||||| ||||||||||||||  | ||||||| ||||||||    
T  1276795 aatgcatcaaaattttaaagtagtcattgattgtgtagttcattaatcaaaata 1276742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 166
Target Start/End: Original strand, 34033232 - 34033287
Alignment:
Q  110 taatgtatcaaaattttaaaatagtcattgattgtccatttcattagtcaaaataat 166  Q
    ||||||||||||||||| |||||||  |||||||| || ||| ||||||||||||||    
T  34033232 taatgtatcaaaatttt-aaatagtttttgattgtgcaattctttagtcaaaataat 34033287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 164
Target Start/End: Complemental strand, 34034884 - 34034840
Alignment:
Q  120 aaattttaaaatagtcattgattgtccatttcattagtcaaaata 164  Q
    ||||| ||||||||||||||||| | |||||| ||||||||||||    
T  34034884 aaattataaaatagtcattgattatgcatttcgttagtcaaaata 34034840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 164
Target Start/End: Original strand, 29235 - 29285
Alignment:
Q  114 gtatcaaaattttaaaatagtcattgattgtccatttcattagtcaaaata 164  Q
    |||||||||||| ||||||||  ||||||||||| || |||||||||||||    
T  29235 gtatcaaaatttcaaaatagttcttgattgtccactttattagtcaaaata 29285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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