View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9341_low_21 (Length: 256)
Name: NF9341_low_21
Description: NF9341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9341_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 13 - 241
Target Start/End: Complemental strand, 6638074 - 6637858
Alignment:
| Q |
13 |
atacgaggcaacaaatgcaacggcaagaaaaaagagatgatcaatactaataaaaaacttgatgtccttatgaaacatttgggattcgttggatcttctt |
112 |
Q |
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| T |
6638074 |
atacgaggcaacaaatgcaacggcaagaaaaaagagatgatcaatactaataaaaaacttgatgtccttatgaaacatttgggattcgttggatcttctt |
6637975 |
T |
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| Q |
113 |
cccatgtttcaaaccccaacagtgaatcaaatgagcacattgatgaagttgtcgatgaagatgacaatgattttgttgaagatgttgatgaagataacat |
212 |
Q |
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| T |
6637974 |
cccatgtttcaaaccccaacagtgaattaaatgagcacattgatgaagttgtcgatgaagatgacaatgattttgttga------------agataacat |
6637887 |
T |
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| Q |
213 |
tagttatcatatttataactagtaatttg |
241 |
Q |
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| T |
6637886 |
tagttatcatatttataactagtaatttg |
6637858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 7 - 237
Target Start/End: Original strand, 29757788 - 29758029
Alignment:
| Q |
7 |
agttgcatacgaggcaacaaatgcaacggcaagaaaaaagagatgatcaatactaataaaaaacttgatgtccttatgaaacatttgggattcgttggat |
106 |
Q |
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| T |
29757788 |
agttgcaaatgaggcaccaaatgcaacggcaagaaaa-agagatgagcaaaactaataaaaaacttgctgtcattatgaaacatttgggatttgttggat |
29757886 |
T |
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| Q |
107 |
cttcttcccatgtttcaaaccccaacagtgaatcaaatgagcacattgatgaagttgtcga------------tgaagatgacaatgattttgttgaaga |
194 |
Q |
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| T |
29757887 |
cttcttcccatgtttcaaatcccaacagtgaatcaaatgagcacattgatgaagaggacaacaatgatttttttgaagatgaccatgatttttctgaaga |
29757986 |
T |
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| Q |
195 |
tgttgatgaagataacattagttatcatatttataactagtaa |
237 |
Q |
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| T |
29757987 |
tgttgatgaagataacaatagttatcatattgataactagtaa |
29758029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 9e-45; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 45 - 160
Target Start/End: Complemental strand, 127828 - 127713
Alignment:
| Q |
45 |
agagatgatcaatactaataaaaaacttgatgtccttatgaaacatttgggattcgttggatcttcttcccatgtttcaaaccccaacagtgaatcaaat |
144 |
Q |
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| T |
127828 |
agagatgatcaatgctaataaaaaacttgctatcattatgaaacatttgggatttgttggatcttcttcctatgtttcaaaccccaacagtgaatcaaat |
127729 |
T |
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| Q |
145 |
gagcacattgatgaag |
160 |
Q |
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| T |
127728 |
gagcacattgatgaag |
127713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 156 - 237
Target Start/End: Complemental strand, 127693 - 127612
Alignment:
| Q |
156 |
tgaagttgtcgatgaagatgacaatgattttgttgaagatgttgatgaagataacattagttatcatatttataactagtaa |
237 |
Q |
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| T |
127693 |
tgaagatgtcgatgaagatgacaatgattttgttgaagatgttgatgaagataacataagttatcatattgataactagtaa |
127612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 124
Target Start/End: Complemental strand, 127875 - 127840
Alignment:
| Q |
89 |
atttgggattcgttggatcttcttcccatgtttcaa |
124 |
Q |
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| T |
127875 |
atttgggatttgttggatcttcttcccatgtttcaa |
127840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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