View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9341_low_28 (Length: 213)
Name: NF9341_low_28
Description: NF9341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9341_low_28 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 92 - 158
Target Start/End: Original strand, 42476999 - 42477065
Alignment:
| Q |
92 |
gatatttcttaacatcgattttttggagttaaactctacaatatctctgaaggagagtaaatgtaca |
158 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42476999 |
gatatttcttaacatcgattttttggagttaaactctacaatatctctgaaggagagtaaatgtaca |
42477065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 42476928 - 42476970
Alignment:
| Q |
20 |
aaactcactgactccttcatccaaccattaaatcaacttcata |
62 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42476928 |
aaactcactgactccttcatccaaccattaaatcaacttcata |
42476970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University