View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9341_low_4 (Length: 614)
Name: NF9341_low_4
Description: NF9341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9341_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 18 - 600
Target Start/End: Complemental strand, 8352941 - 8352358
Alignment:
| Q |
18 |
aaagggacatcaacaataaaacttgagatgaatcctctctactgatgcattctacagaaattaacattgcaaggccaatatccatgtgtttatgattgtg |
117 |
Q |
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| T |
8352941 |
aaagggacatcaacaataa---ttgagatgaatcctctctactgatgcattctacagaaattaacattgcaaggccaatatccatgtgtttatgattgtg |
8352845 |
T |
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| Q |
118 |
gtttgg------------------ttctatgtaaaatatatcttgaacttttgcagattggttccttattattttgttatttttccgaaccacaaaccat |
199 |
Q |
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| T |
8352844 |
gtttgaaatattaccttaaaaagtttctatgtaaaatatatcttgaacttttgcagattggttccttattattttgttatttttccgaaccacaaaccat |
8352745 |
T |
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| Q |
200 |
tcatctttctgtcttcaatgcaatcatccaatgacaggattaagtagaagcttttaagcgtatgtttgatttaccgttacacgttccaaagcatgtctga |
299 |
Q |
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| T |
8352744 |
tcatctttctgtcttcaatgcaatcatccaatgacaggattaagtagaagcttttaagcgtatgtttgatttaccgttacacgttccaaagcatgtctga |
8352645 |
T |
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| Q |
300 |
ttgacatgcattgattgacatacatatgcatctcatgaatgttttttgtttatcttggcagccatagatcgtgctacaaggcagtccgattccaacagga |
399 |
Q |
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| T |
8352644 |
ttgacatgcat--------------atgcatctcatgaatgttttttgtttatcttggcagccatagatcgtgctacaaggcagtccgattccaacagga |
8352559 |
T |
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| Q |
400 |
tcttacatcagaaatctaccatagatcatgctacaacgcaatgcgagtctaaagaatttgttctctcatgtaggaatttagttttttagttcaacacata |
499 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8352558 |
tcttacatcagaaatctaccatagatcatgctacaaagcaatgcgagtctaaagaatttgttctctcatgtaggaatttagttttttagttcaacacata |
8352459 |
T |
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| Q |
500 |
gaatctgtactgcaaagcattgtttattatacacctctgacccccttttcaatgaatagtgtgttgaaatttgtttttggtttcagttttgtatgtgaca |
599 |
Q |
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| T |
8352458 |
gaatctgtactgcaaagcattgtttattatacacctctgacccccttttcaatgaatagtgtgttgaaatttgtttttggtttcagttttgtatgtgaca |
8352359 |
T |
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