View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9341_low_5 (Length: 451)

Name: NF9341_low_5
Description: NF9341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9341_low_5
NF9341_low_5
[»] chr1 (5 HSPs)
chr1 (36-436)||(1379418-1379829)
chr1 (351-420)||(40908904-40908973)
chr1 (19-61)||(30996455-30996497)
chr1 (311-388)||(43857501-43857578)
chr1 (18-62)||(1609536-1609580)
[»] chr2 (5 HSPs)
chr2 (304-420)||(3082093-3082210)
chr2 (226-295)||(3081997-3082066)
chr2 (24-61)||(11146994-11147031)
chr2 (25-61)||(17239691-17239727)
chr2 (25-61)||(25985142-25985178)
[»] chr5 (1 HSPs)
chr5 (196-380)||(6605145-6605344)
[»] chr8 (4 HSPs)
chr8 (23-61)||(41068317-41068355)
chr8 (23-61)||(8768909-8768947)
chr8 (18-63)||(13526070-13526115)
chr8 (18-63)||(13615605-13615650)
[»] scaffold0008 (1 HSPs)
scaffold0008 (18-59)||(240662-240703)
[»] chr4 (7 HSPs)
chr4 (29-61)||(46444260-46444292)
chr4 (18-61)||(33859965-33860008)
chr4 (30-61)||(39267579-39267610)
chr4 (18-61)||(46826698-46826741)
chr4 (18-61)||(48801950-48801993)
chr4 (23-61)||(1846239-1846277)
chr4 (25-58)||(15633207-15633240)
[»] chr6 (2 HSPs)
chr6 (24-55)||(22398362-22398393)
chr6 (24-61)||(34805967-34806004)
[»] chr3 (1 HSPs)
chr3 (18-61)||(49350842-49350885)


Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 36 - 436
Target Start/End: Original strand, 1379418 - 1379829
Alignment:
Q  36 gataaatatttattacaaaacattaaatgtgtttttgaaatgtcatttttctccctttagaatacaataaattcacccataatttcaaagaagcactttc 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1379418 gataaatatttattacaaaacattaaatgtgtttttgaaatgtcatttttctcccttcagaatacaataaattcacccataatttcaaagaagcactttc 1379517  T
Q  136 catattagtttcaaaatgtggggtttgnnnnnnnncacaaattagttgtttcttttcccgtgtagcaaaatgacattgttgctttaatttgtttcattct 235  Q
    ||||| |||||||||||||||||||||        ||||||||||||||||||||||| ||||||||||||||||||||||||||     ||||||||||    
T  1379518 catatgagtttcaaaatgtggggtttgttttttt-cacaaattagttgtttcttttccggtgtagcaaaatgacattgttgcttt-----gtttcattct 1379611  T
Q  236 tgagaaatgtaatggtttgtatttcatgttggctgcttatttgattggctattga------------------tttgaagaggagcatcgacgtctcata 317  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||                  |||||||||||||||||||||||||||    
T  1379612 tgagaaatgtaatggtttgtatt-catgttggctgcttatttgattggctattgatttgatttgcaggtttgatttgaagaggagcatcgacgtctcata 1379710  T
Q  318 catataatgaagcttcaaaatgtccagctttcgaacctatatgtatgttatgtttgatgtccattttatttactgctttttgttttcacatctctgaaac 417  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1379711 aatataatgaagcttcaaaatgtccagctttcgaacctatatgtatgttatgtttgatgtccattttatttactgctttttgttttcacatctctgaaac 1379810  T
Q  418 taattgccttgcttgatgt 436  Q
    |||||||||||||| ||||    
T  1379811 taattgccttgctttatgt 1379829  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 351 - 420
Target Start/End: Original strand, 40908904 - 40908973
Alignment:
Q  351 aacctatatgtatgttatgtttgatgtccattttatttactgctttttgttttcacatctctgaaactaa 420  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||| ||||||||||||    
T  40908904 aacctatatgtatgttatgtttgatgtctattttatttactgttttttgtttttacagctctgaaactaa 40908973  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 30996497 - 30996455
Alignment:
Q  19 ttatggattccataaatgataaatatttattacaaaacattaa 61  Q
    ||||||||| ||||||||| |||||||||||||||||||||||    
T  30996497 ttatggatttcataaatgaaaaatatttattacaaaacattaa 30996455  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 311 - 388
Target Start/End: Original strand, 43857501 - 43857578
Alignment:
Q  311 tctcatacatataatgaagcttcaaaatgtccagctttcgaacctatatgtatgttatgtttgatgtccattttattt 388  Q
    |||||||| ||| |||||  ||||||||| ||| |||| |||||| ||||| | || |||||||||||||||||||||    
T  43857501 tctcatacctatgatgaatgttcaaaatgaccaacttttgaacctttatgttttttttgtttgatgtccattttattt 43857578  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 1609580 - 1609536
Alignment:
Q  18 gttatggattccataaatgataaatatttattacaaaacattaaa 62  Q
    |||| |||||||||||||  |||||||||||||||||||| ||||    
T  1609580 gttaaggattccataaatagtaaatatttattacaaaacactaaa 1609536  T

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Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 304 - 420
Target Start/End: Original strand, 3082093 - 3082210
Alignment:
Q  304 atcgacgtctcatacatataatgaagcttcaaaatgtccagctttcgaacctatatgtatgttatgtttgatgtccattttatttactg-ctttttgttt 402  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||| |||||||||||||  |||||||||    
T  3082093 atcgacatctcatacatataatgaagcttcaaaatgaccagctttttaacctatatgtatgttatgtttgatgtctattttatttactgtttttttgttt 3082192  T
Q  403 tcacatctctgaaactaa 420  Q
    | ||||||||||||||||    
T  3082193 ttacatctctgaaactaa 3082210  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 226 - 295
Target Start/End: Original strand, 3081997 - 3082066
Alignment:
Q  226 gtttcattcttgagaaatgtaatggtttgtatttcatgttggctgcttatttgattggctattgatttga 295  Q
    |||||||||||||||||||| ||||||   ||||||| |||||| ||||||||||||| |||||||||||    
T  3081997 gtttcattcttgagaaatgtgatggttacaatttcatattggctacttatttgattggttattgatttga 3082066  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 11147031 - 11146994
Alignment:
Q  24 gattccataaatgataaatatttattacaaaacattaa 61  Q
    ||||||||||||||||||||||||||||||||||||||    
T  11147031 gattccataaatgataaatatttattacaaaacattaa 11146994  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 17239691 - 17239727
Alignment:
Q  25 attccataaatgataaatatttattacaaaacattaa 61  Q
    |||||||||||| |||||||||||||||||| |||||    
T  17239691 attccataaatggtaaatatttattacaaaatattaa 17239727  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 25985142 - 25985178
Alignment:
Q  25 attccataaatgataaatatttattacaaaacattaa 61  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  25985142 attccataaatggtaaatatttattacaaaaccttaa 25985178  T

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Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 196 - 380
Target Start/End: Original strand, 6605145 - 6605344
Alignment:
Q  196 tgtagcaaaatgacattgttgctttaatttgtttcattcttgagaaatgtaatggtttgtatttcatgttggctgcttatttgattggctattgatttg- 294  Q
    |||||||||||||||||||||||||     |||||||||||||||||||||||||||  |||||||| |||||| ||||||||||||||||||||||||     
T  6605145 tgtagcaaaatgacattgttgcttt-----gtttcattcttgagaaatgtaatggttcctatttcatattggctacttatttgattggctattgatttgg 6605239  T
Q  295 -----------------aagaggagcatcgacgtctcatacatataatgaagcttcaaaatgtccagctttcgaacctatatgtatgt--tatgtttgat 375  Q
                     |||||||  ||  || ||||||||||||||||||||||||||||| || | ||| ||||||||||||||||  ||||||||||    
T  6605240 tatgcgagtttgattggaagaggatgattaacatctcatacatataatgaagcttcaaaatgacccgtttttgaacctatatgtatgttatatgtttgat 6605339  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 61
Target Start/End: Complemental strand, 41068355 - 41068317
Alignment:
Q  23 ggattccataaatgataaatatttattacaaaacattaa 61  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  41068355 ggattccataaatgataaatatttatcacaaaacattaa 41068317  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 61
Target Start/End: Complemental strand, 8768947 - 8768909
Alignment:
Q  23 ggattccataaatgataaatatttattacaaaacattaa 61  Q
    |||||| ||||||| ||||||||||||||||||||||||    
T  8768947 ggattcaataaatggtaaatatttattacaaaacattaa 8768909  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 13526115 - 13526070
Alignment:
Q  18 gttatggattccataaatgataaatatttattacaaaacattaaat 63  Q
    |||| |||||||||||||  ||||||| ||||||||||||||||||    
T  13526115 gttaaggattccataaatagtaaatatctattacaaaacattaaat 13526070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 13615650 - 13615605
Alignment:
Q  18 gttatggattccataaatgataaatatttattacaaaacattaaat 63  Q
    |||| |||||||||||||  ||||||| ||||||||||||||||||    
T  13615650 gttaaggattccataaatagtaaatatctattacaaaacattaaat 13615605  T

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Target: scaffold0008 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 240703 - 240662
Alignment:
Q  18 gttatggattccataaatgataaatatttattacaaaacatt 59  Q
    |||| |||||||||||||||||||||||||||| ||||||||    
T  240703 gttaaggattccataaatgataaatatttattataaaacatt 240662  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 46444292 - 46444260
Alignment:
Q  29 cataaatgataaatatttattacaaaacattaa 61  Q
    |||||||||||||||||||||||||||||||||    
T  46444292 cataaatgataaatatttattacaaaacattaa 46444260  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 33860008 - 33859965
Alignment:
Q  18 gttatggattccataaatgataaatatttattacaaaacattaa 61  Q
    |||| |||||| ||| ||||||||||||||||||||||||||||    
T  33860008 gttaaggattctatatatgataaatatttattacaaaacattaa 33859965  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 61
Target Start/End: Original strand, 39267579 - 39267610
Alignment:
Q  30 ataaatgataaatatttattacaaaacattaa 61  Q
    ||||||||||||||||||||||||||||||||    
T  39267579 ataaatgataaatatttattacaaaacattaa 39267610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 46826741 - 46826698
Alignment:
Q  18 gttatggattccataaatgataaatatttattacaaaacattaa 61  Q
    |||| |||||||||||||| ||||||||||||| ||||||||||    
T  46826741 gttaaggattccataaatggtaaatatttattaaaaaacattaa 46826698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 48801950 - 48801993
Alignment:
Q  18 gttatggattccataaatgataaatatttattacaaaacattaa 61  Q
    |||| |||||||||||||||||||||||||||| |||| |||||    
T  48801950 gttaaggattccataaatgataaatatttattaaaaaatattaa 48801993  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 61
Target Start/End: Complemental strand, 1846277 - 1846239
Alignment:
Q  23 ggattccataaatgataaatatttattacaaaacattaa 61  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  1846277 ggatttcataaatggtaaatatttattacaaaacattaa 1846239  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 15633207 - 15633240
Alignment:
Q  25 attccataaatgataaatatttattacaaaacat 58  Q
    |||||||||||| |||||||||||||||||||||    
T  15633207 attccataaatggtaaatatttattacaaaacat 15633240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 55
Target Start/End: Original strand, 22398362 - 22398393
Alignment:
Q  24 gattccataaatgataaatatttattacaaaa 55  Q
    ||||||||||||||||||||||||||||||||    
T  22398362 gattccataaatgataaatatttattacaaaa 22398393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 34806004 - 34805967
Alignment:
Q  24 gattccataaatgataaatatttattacaaaacattaa 61  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  34806004 gattctataaatgataaatatttactacaaaacattaa 34805967  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 49350885 - 49350842
Alignment:
Q  18 gttatggattccataaatgataaatatttattacaaaacattaa 61  Q
    |||| |||||||||||||| ||||||||||||||||||| ||||    
T  49350885 gttaaggattccataaatggtaaatatttattacaaaactttaa 49350842  T

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