View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9341_low_6 (Length: 446)
Name: NF9341_low_6
Description: NF9341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9341_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 370; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 16 - 428
Target Start/End: Complemental strand, 28722411 - 28721999
Alignment:
| Q |
16 |
tgtccattttaattggtcatttgccattcggttatcgtaatcaaaatatagggttactacgtgtacgcataatcaatgtacgatcgatgaatttatcata |
115 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
28722411 |
tgtccattttaattggtcattcgccattcggttatcgtaatcaaaatatagggttactacatgtacgcataatcaatgtacgatcgatgaatttatcata |
28722312 |
T |
|
| Q |
116 |
ttcatgatacctttcagttaatcaacaacaatcatacta-attgattaattaccatactttatcttaaccatcacatataaactagattattggactatc |
214 |
Q |
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||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28722311 |
ttcatgatacctttcagttaatcaacag-aatcatactatattgattaattaccatactttatcttaaccatcacatataaactagattattggactatc |
28722213 |
T |
|
| Q |
215 |
cattcagagtccttttaattatcttctctatttcaatcactaaagattaacaaggttactaattgtacgtgatatagtactaacccatattaaggttaag |
314 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28722212 |
cattcagagtccttttaattatcttctctacttcaatcactaaagattaacaaggttactaattgtacgtgatatagtactaacccatattaaggttaag |
28722113 |
T |
|
| Q |
315 |
ggtcaagaatcttgtaaccctctcaccaatcactcgtgattcatctcaatcacatcttgtttcgggggttactcttgatgtacaaatgaattgaatatta |
414 |
Q |
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||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
28722112 |
ggtcaagaatcatgtaaccgtctcaccaatcactcgtgattcatctcaatcacatcttgtttcgggggttactattgatgtacaaatgaattgaatatta |
28722013 |
T |
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| Q |
415 |
tagggtactacatt |
428 |
Q |
| |
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|||||||||||||| |
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| T |
28722012 |
tagggtactacatt |
28721999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 100 - 424
Target Start/End: Complemental strand, 28714775 - 28714469
Alignment:
| Q |
100 |
cgatgaatttatcatattcatgata--cctttcagttaatcaacaacaatcatacta-attgattaattaccatactttatcttaaccatcacatataaa |
196 |
Q |
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|
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||| ||| ||| |
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| T |
28714775 |
cgatgaatttatcatattcatgatatacctttcagctaatcaacaacaatcatactatattgattaattaccatattttatcttcaccatcaaatagaaa |
28714676 |
T |
|
| Q |
197 |
ctagattattggactatccattcagagtccttttaattatcttctctatttcaatcactaaagattaacaaggttactaattgtacgtgatatagtacta |
296 |
Q |
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| T |
28714675 |
ctagattattggactatccattcatagtc------agtatcttctctatttcaattactaaagattaacaaggt----aattgtac------------ta |
28714598 |
T |
|
| Q |
297 |
acccatattaaggttaagggtcaagaatcttgtaaccctctcaccaatcactcgtgattcatctcaatcacatcttgtttcgggggttactct-tgatgt |
395 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| | ||||||||||||| ||||| | |||| | |
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| T |
28714597 |
acccatattaaggttaagggtcaagaatcatgtaaccctctcaccaatcactcatgattcatctcaatctcttcttgtttcggggtttactttatgatct |
28714498 |
T |
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| Q |
396 |
acaaatgaattgaatattatagggtacta |
424 |
Q |
| |
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||||||||||| ||| ||||||||||||| |
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| T |
28714497 |
acaaatgaattaaatgttatagggtacta |
28714469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 28714879 - 28714835
Alignment:
| Q |
16 |
tgtccattttaattggtcatttgccattcggttatcgtaatcaaa |
60 |
Q |
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||||||||||| ||||||||||| ||||| ||||| ||||||||| |
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| T |
28714879 |
tgtccattttacttggtcatttgtcattccgttatggtaatcaaa |
28714835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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