View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9341_low_9 (Length: 406)
Name: NF9341_low_9
Description: NF9341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9341_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 338; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 34254781 - 34254391
Alignment:
| Q |
1 |
accatagcatgtcaaagagcattgtcctgcaccgattttgtgtcggtaagtaaaagctacgtatcaaatgtgactttctccaaacatacaaaacaaagct |
100 |
Q |
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| T |
34254781 |
accatagcatgtcaaagagcattgtcctgcaccgattttgtgtcggtaagtaaaagctacgtatcaaatgtgactttctccaaacatacaaaacaaagct |
34254682 |
T |
|
| Q |
101 |
acccttgagcattaagaaaattcaatcaatctatataaatatctaggatcatataggttcaaattataatacatgcatgcatgttgcagacgatcaaatt |
200 |
Q |
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| T |
34254681 |
acccttgagcattaagaaaattcaatcaatctatataaatatctaggatcatataggtttaaattataatacatgcatgcatgttgcagacgatcaaatt |
34254582 |
T |
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| Q |
201 |
gatcaaagtcgcggcagaaaatatcttcataaatatttatcaggcattactggctttgagaatgtcatttcataattcnnnnnnnnnnnnnnngacacaa |
300 |
Q |
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| T |
34254581 |
gatcaaagtcgcggcagaaaatatcttcataaatatttatcaggcattactggctttgagaatgtcatttcataattctttttttttttttttgacacaa |
34254482 |
T |
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| Q |
301 |
tcatttcataattcataagtagcttaagttcagcatagcaacatccctaactgactccacaatttgtctacttagttcaaccagtaatcat |
391 |
Q |
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| T |
34254481 |
tcatttaataattcataagtagcttaagttcagcatagcaacatccctaactgactccacaatttgtctacttagttcaaccagtaatcat |
34254391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 35 - 132
Target Start/End: Complemental strand, 29141958 - 29141861
Alignment:
| Q |
35 |
attttgtgtcggtaagtaaaagctacgtatcaaatgtgactttctccaaacatacaaaacaaagctacccttgagcattaagaaaattcaatcaatct |
132 |
Q |
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| T |
29141958 |
attttgtgtcggtaagtaaaagctatgaatcaaatgtgactttctctaaacgtacaaaataaagctacccctatgcattaacaaaatttaatcaatct |
29141861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 29139809 - 29139756
Alignment:
| Q |
192 |
gatcaaattgatcaaagt-cgcggcagaaaatatcttcataaatatttatcagg |
244 |
Q |
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||||||| |||| ||||| |||||||||||||||||||||||| |||||||||| |
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| T |
29139809 |
gatcaaaatgattaaagtgcgcggcagaaaatatcttcataaacatttatcagg |
29139756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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