View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9342_1 (Length: 555)
Name: NF9342_1
Description: NF9342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9342_1 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 19024403 - 19024082
Alignment:
| Q |
1 |
cttcatttgcttatttgattgtttttcttcattccgattccttannnnnnnaattattagttgcaaggaagttgattctacaacagcaactaaagcacgt |
100 |
Q |
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| T |
19024403 |
cttcatttgcttatttgattgtttttcttcatttgtattccttatt-------ttttttgttgcaagggagttgattctacaacaacaactaaagcatgt |
19024311 |
T |
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| Q |
101 |
gtaatattgaagttcaagcaacggttgaggtaaagggctttggaacgttggcgactgactcacggtggtgggagagagcttgaagtggtaacaaaatcat |
200 |
Q |
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| T |
19024310 |
gtaatattgaagttcaa-caacggttgaggtaaagggcttcggaacgttgatatctgactcacggtggtgggagagaacttgaagtggtaacacaatcac |
19024212 |
T |
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| Q |
201 |
ctctcctaagaatttcactttagattctctgtttgtgttctgttccatggtaaaaataataactataggattttttgttaactatcatcaaagaaactga |
300 |
Q |
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| T |
19024211 |
ctcccctaagaatttcactttagattctctgtttgtgttctgttccatggtaacaataataactataggacttcttgttaactatcatcaaagaaactaa |
19024112 |
T |
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| Q |
301 |
catattttttcctcttggaaaaataacact |
330 |
Q |
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| T |
19024111 |
catattttttcctcttggaaaaataacact |
19024082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 24414200 - 24414033
Alignment:
| Q |
1 |
cttcatttgcttatttgattgtttttcttcattccgattccttannnnnnnaattattagttgcaaggaagttgattctacaacagcaactaaagcacgt |
100 |
Q |
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| T |
24414200 |
cttcatttgcttatttgattgtttttcttcatttgtattccttatt-------ttttttgttgcaagggagttgattctacaacagcaattaaagcacgt |
24414108 |
T |
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| Q |
101 |
gtaatattgaagttcaagcaacggttgaggtaaagggctttggaacgttggcgactgactcacggtggtgggaga |
175 |
Q |
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| T |
24414107 |
ctaatattgaagttgaagcaacggttgaggtaaagggctttggaacgttggcgactgactcacggtggtgggaga |
24414033 |
T |
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