View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9342_4 (Length: 356)
Name: NF9342_4
Description: NF9342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9342_4 |
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Alignment Details
Target: chr6 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 185 - 240
Target Start/End: Original strand, 24414328 - 24414383
Alignment:
| Q |
185 |
tcaaaccgatacaattaatagatggaaggaagaaatcttcaattcttcactaacaa |
240 |
Q |
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| T |
24414328 |
tcaaaccgatacaattaatagatggaaggaagaaatcttcaattctgcactaacaa |
24414383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 278
Target Start/End: Complemental strand, 1759141 - 1759099
Alignment:
| Q |
236 |
aacaaacacactaacatttcaattctaaaacctaacattacaa |
278 |
Q |
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| T |
1759141 |
aacaaatacactaacatttcaatcctaaaacctaacattacaa |
1759099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 258 - 297
Target Start/End: Complemental strand, 31039014 - 31038975
Alignment:
| Q |
258 |
ttctaaaacctaacattacaagtattcaattaaaaattca |
297 |
Q |
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| T |
31039014 |
ttctaaaacctaacattacaagtattcaattttaaattca |
31038975 |
T |
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Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 30397371 - 30397441
Alignment:
| Q |
6 |
tatgaaatcgaaaaagaactaaaaaatgcaatataggttcgtctagaaaacattcctaagaaataccatag |
76 |
Q |
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| T |
30397371 |
tatgaaaatgaaaaagaactagaaaatgcaatataggttagtctagaaaacagtcttaagaaataccatag |
30397441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 298
Target Start/End: Complemental strand, 31184299 - 31184231
Alignment:
| Q |
228 |
tcttcactaacaaacacactaacatttcaattctaaaacctaacattacaagtattcaattaaaaattcag |
298 |
Q |
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| T |
31184299 |
tcttcattaacaaacaaacaaacatttcaattctaaaaccta--ataacaagtattgaattaaaaattcag |
31184231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 439887 - 439948
Alignment:
| Q |
158 |
tcacactgctttctctcttttagcttctcaaaccgatacaattaatagatggaaggaagaaa |
219 |
Q |
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| T |
439887 |
tcacactaatttctctcttttagcttctcaaaccaattcaattaacagatggaaggaagaaa |
439948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 272
Target Start/End: Original strand, 14983485 - 14983522
Alignment:
| Q |
235 |
taacaaacacactaacatttcaattctaaaacctaaca |
272 |
Q |
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| T |
14983485 |
taacaaacacactaacatttcaattttaaaacctaaca |
14983522 |
T |
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