View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9342_low_1 (Length: 465)
Name: NF9342_low_1
Description: NF9342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9342_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 416; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 6 - 449
Target Start/End: Complemental strand, 27260868 - 27260425
Alignment:
| Q |
6 |
gtttggtgttctgcattgctggtttaaatggatggtgtttttctaaccgtttaaaaaataaactataatttgaagatttatatatttttctccttgtgtt |
105 |
Q |
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| T |
27260868 |
gtttggtattctgcattgctggtttaaatggatggtgtttttctaaccgtttaaaaaatgaactataatttgaagatttatatatttttctccttgtgtt |
27260769 |
T |
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| Q |
106 |
actagtagtacaagtgtataacatgcaccaaaaagggtaacaattatagttgtttgtttgtaggaaaaataagtgtgaggtcataattttctttgctgat |
205 |
Q |
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| T |
27260768 |
actagtagtacaagtgtataacatgcaccaaaaagggtaacaattatagttgtttgtttgtaggaaaaataagtgtgaggtcataattttctttgctgat |
27260669 |
T |
|
| Q |
206 |
taattggtttgtctctttctcaaagatatatggtcctgatttaataccaggatttggtgagattggggcaaagaggtcatcaaagactcaaagcatgcca |
305 |
Q |
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| T |
27260668 |
taattggtttgtctctttctcaaagatatatggtcctgatttaataccaggatttggtgagattggggtaaagaggtcatcaaagactcaaagcatgcca |
27260569 |
T |
|
| Q |
306 |
tgtctaaagtctaaacatagatttttaatgcatcaattccctctgctaaatgttaaggcagaatatgttgattttgtagttgttgagaccaaaaattttc |
405 |
Q |
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| T |
27260568 |
tgtctaaagtctaaacatagatttttaatgcatcaattccctctgctaaatgttaaggcagaatatgctgatcttgtagttgttgagaccaaaaattttc |
27260469 |
T |
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| Q |
406 |
cacatcttgtagaatagaatgtgttgcttggtaccgtaaaaaag |
449 |
Q |
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| T |
27260468 |
tacatcttgtagaatagaatgtgttgcttggtactgtaaaaaag |
27260425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 202 - 434
Target Start/End: Complemental strand, 21193025 - 21192801
Alignment:
| Q |
202 |
tgattaattggtttgtctctttctcaaagat--atatggtcctgatttaataccaggatttggtgagattggggcaaagaggtcatcaaagactcaaagc |
299 |
Q |
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| T |
21193025 |
tgattaattgatttgtctctttctcgataatttatatggtcctgatttaataccaggatttggtgagattggggtaaccaagtcatcaaag--------c |
21192934 |
T |
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| Q |
300 |
atgccatgtctaaagtctaaacatagatttttaatgcatcaattccctctgctaaatgttaaggcagaatatgttgattttgtagttgttgagaccaaaa |
399 |
Q |
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| T |
21192933 |
atgccatgtcttaaca-tatactttcaaattcaatgcatcaattccctctgctaaatgttgaagcagaatatgctgattt-gtagttcttgagaccaaaa |
21192836 |
T |
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| Q |
400 |
attttccacatcttgtagaatagaatgtgttgctt |
434 |
Q |
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| T |
21192835 |
aaattctacatcttgtagaagagaatgtgttgctt |
21192801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 202 - 434
Target Start/End: Complemental strand, 27248816 - 27248592
Alignment:
| Q |
202 |
tgattaattggtttgtctctttctcaaagat--atatggtcctgatttaataccaggatttggtgagattggggcaaagaggtcatcaaagactcaaagc |
299 |
Q |
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|||||||||| |||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||| || | |||||||||| | |
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| T |
27248816 |
tgattaattgatttgtctctttctcaataatttatatggtcctgatttaatatcaggatttggtgagattggggtaaccaagtcatcaaag--------c |
27248725 |
T |
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| Q |
300 |
atgccatgtctaaagtctaaacatagatttttaatgcatcaattccctctgctaaatgttaaggcagaatatgttgattttgtagttgttgagaccaaaa |
399 |
Q |
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| T |
27248724 |
atgccatgtcttaaca-tatactttcaaattcaacgcatcaattccctctgctaaatgttgaagcagaatatgctgattt-gtagttcttgagaccaaaa |
27248627 |
T |
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| Q |
400 |
attttccacatcttgtagaatagaatgtgttgctt |
434 |
Q |
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| T |
27248626 |
aaattctacatcttgtagaagagaatgtgttgctt |
27248592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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