View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9342_low_3 (Length: 239)
Name: NF9342_low_3
Description: NF9342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9342_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 43131697 - 43131511
Alignment:
| Q |
1 |
aacatagtagccagtgaatgtaaatcctctgccaactatctcacccccacaataccaaagataacactcaagtccgaataaagcagctgtgccaattttc |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43131697 |
aacatagtagccagtaaatgtaaatcctctgccaactatctcacccccacaataccaaagataacactcaagtccgaataaagcagctgtgccaattttc |
43131598 |
T |
|
| Q |
101 |
tccatgtttaactcattcatgttattcattatgttcttagcagagtccaattccttccagaatgaatcgtaacgatgaggaatactg |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43131597 |
tccatgtttaactcattcatgttattcattatgttcttagcagagtccaattccttccagaatgaatcgtaacgatgaggaatactg |
43131511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University