View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9343_high_3 (Length: 239)
Name: NF9343_high_3
Description: NF9343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9343_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 28887526 - 28887753
Alignment:
| Q |
1 |
gaaaatatttcaattgaaattattaagtgaaacacataaatatctggtttattgttttttaataaagaaaattttagatgagttgagttttaaaatttac |
100 |
Q |
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| T |
28887526 |
gaaaatatttcaattgaaattattaagtgaaacacataaatatccgttttattgttttttaataatgaaaattttagatgagttgagttttaaaatttac |
28887625 |
T |
|
| Q |
101 |
cagaggttagggtagactttaactaaagaagtaagttatcacattaatagtgaaaattgaactcatacttttataagatatgagtcaactctttatcaat |
200 |
Q |
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|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28887626 |
cagaggttagggcagactttaactaaagaagtaatttatcacattaatagtgaaaattgaactcatacttttataagatatgagtcaactctttatcaac |
28887725 |
T |
|
| Q |
201 |
tgaatcaacttatatttctaacgtctct |
228 |
Q |
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|
||||||||||||||||| |||||||||| |
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| T |
28887726 |
tgaatcaacttatatttttaacgtctct |
28887753 |
T |
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