View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9343_low_2 (Length: 370)
Name: NF9343_low_2
Description: NF9343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9343_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 20 - 335
Target Start/End: Original strand, 28887188 - 28887503
Alignment:
| Q |
20 |
atgatgtcttaaagttggctcttggttctagtgggactattcataatggtgatgttccacatgatatcacaatagaaggaagtggagctgactttcaaga |
119 |
Q |
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| T |
28887188 |
atgatatcttaaagttggctcttggttcttgcgcaactattcataatggtgatgtttcagatgatatcacaatagaaggaagtggagctggctttcaaga |
28887287 |
T |
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| Q |
120 |
aggtcatgtatgaaaagagatgataaactttgtgacttcgttgtcactcacatactaataatagttggtttaagggaaggaaaatgatatcccattcact |
219 |
Q |
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| T |
28887288 |
aggtcatgtatgaaaagagatgataaactttgtgacttcgttgtcactcacatactaataatagttggtttaagggaaggaaaatgatatcccattcact |
28887387 |
T |
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| Q |
220 |
ttccccccaacaaaatgtgagtttttaatgtatatacattactcaatatataattatgacttgtttgattgtgtttttgctttttagtatttgataactg |
319 |
Q |
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| T |
28887388 |
tttcccccaacaacatgtgagtttttaaagtatatacattactcaatatataattatgacttgtttgattgtgtttttgctttttagtatttgataattg |
28887487 |
T |
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| Q |
320 |
tttgatgtctacctct |
335 |
Q |
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| T |
28887488 |
tttgatgtctacctct |
28887503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 24 - 250
Target Start/End: Original strand, 28882187 - 28882411
Alignment:
| Q |
24 |
tgtcttaaagttggctcttggttctagtgggactattcataatggtgatgttccacatgatatcacaatagaaggaagtggagctgactttcaagaaggt |
123 |
Q |
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| T |
28882187 |
tgtcttaaagctgcctcttggttcttgtaggactattcctaatggtgacattttaaatgatatcacaatagaaggaggtgcacaaggctatcaagtc--- |
28882283 |
T |
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| Q |
124 |
catgtatgaaaagagatgataaactttgtgacttcgttgtcactcacatactaataatagttggtttaagggaaggaaaatgatatcccattcac-tttc |
222 |
Q |
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| T |
28882284 |
catgtatgaaaagtgatgataaactttgtgactttgttgtcactcacatactagtaatagttggtttaagggaagggaaatgatatctcattcacttttc |
28882383 |
T |
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| Q |
223 |
cccccaacaaaatgtgagtttttaatgt |
250 |
Q |
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| T |
28882384 |
cccccattaaaatataagtttttaatgt |
28882411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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