View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9343_low_4 (Length: 253)
Name: NF9343_low_4
Description: NF9343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9343_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 14 - 238
Target Start/End: Original strand, 25180176 - 25180400
Alignment:
| Q |
14 |
agaccagttaatgatcaatgttatacctatcagacccttttgagagacttgatatttagtcttgtacacattaacagctgctgcatgagctagaagttga |
113 |
Q |
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| T |
25180176 |
agaccagttaatgatcaatgttatacctatcacacccttttgagagacttgatatttagtcttgtacacattaacagctgctgcatgagctagaagttga |
25180275 |
T |
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| Q |
114 |
taatgtgcaactaaataaggttcggttccagaatcaccgccggtgcaattgggattaaaccaagaagagcatcgacctggtgccattgcgccatttgcat |
213 |
Q |
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| T |
25180276 |
taatgtgcaactaaataaggttcggttccagaatctccaccggtgcaatttggattaaaccaagaagaacatcgacctggtgccattgcgccatttgcat |
25180375 |
T |
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| Q |
214 |
atccattttgactgtaactccatgg |
238 |
Q |
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| T |
25180376 |
atccattttgactgtaactccatgg |
25180400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 25168513 - 25168733
Alignment:
| Q |
19 |
agttaatgatcaatgttatacctatcagacccttttgagagacttgatatttagtcttgtacacattaacagctgctgcatgagctagaagttgataatg |
118 |
Q |
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| T |
25168513 |
agttaataaccaatgttatacctatcacacccttttgagagacttgatacttggtcttgtacaaattaacaactgctgcatgagctagaagttgataatg |
25168612 |
T |
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| Q |
119 |
tgcaactaaataaggttcggttccagaatcaccgccggtgcaattgggattaaaccaagaagagcatcgacctggtgccattgcgccatttgcatatcca |
218 |
Q |
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| T |
25168613 |
tgcaactaaataaggttcagttccagaatcaccgccggtgcaatttggattcaaccaagaagagcatcgaccaggtgccatttcaccatttgcataccca |
25168712 |
T |
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| Q |
219 |
ttttgactgtaactccatggt |
239 |
Q |
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| T |
25168713 |
tcttgactgtaagtccatggt |
25168733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 25252753 - 25252533
Alignment:
| Q |
19 |
agttaatgatcaatgttatacctatcagacccttttgagagacttgatatttagtcttgtacacattaacagctgctgcatgagctagaagttgataatg |
118 |
Q |
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| T |
25252753 |
agttaataaccaatgttatacctatcacacccttttgagagacttgatacttggtcttgtacaaattaacaactgctgcatgagctagaagttgataatg |
25252654 |
T |
|
| Q |
119 |
tgcaactaaataaggttcggttccagaatcaccgccggtgcaattgggattaaaccaagaagagcatcgacctggtgccattgcgccatttgcatatcca |
218 |
Q |
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| T |
25252653 |
tgcaactaaataaggttctgttccagaatcaccgccggtgcaatttggattcaaccaagaagagcatcgtcctggtgccatttcaccatttgcataccca |
25252554 |
T |
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| Q |
219 |
ttttgactgtaactccatggt |
239 |
Q |
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| T |
25252553 |
tcttgactgtaagtccatggt |
25252533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 33 - 238
Target Start/End: Original strand, 25159966 - 25160171
Alignment:
| Q |
33 |
gttatacctatcagacccttttgagagacttgatatttagtcttgtacacattaacagctgctgcatgagctagaagttgataatgtgcaactaaataag |
132 |
Q |
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| T |
25159966 |
gttatgcctattacacccttttgagattctttatactttttcttgtacacatcaacggctgcggcatgtgcaagaagttggtaatgtgttaccaaatagg |
25160065 |
T |
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| Q |
133 |
gttcggttccagaatcaccgccggtgcaattgggattaaaccaagaagagcatcgacctggtgccattgcgccatttgcatatccattttgactgtaact |
232 |
Q |
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| T |
25160066 |
gctcgatcgcagaatcaccgccagtacaatttggattcaaccaactggagcaacgacccggtgccattcgcccatttgcatagccattttggctatagct |
25160165 |
T |
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| Q |
233 |
ccatgg |
238 |
Q |
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| T |
25160166 |
ccatgg |
25160171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 63 - 239
Target Start/End: Complemental strand, 9213949 - 9213773
Alignment:
| Q |
63 |
tgatatttagtcttgtacacattaacagctgctgcatgagctagaagttgataatgtgcaactaaataaggttcggttccagaatcaccgccggtgcaat |
162 |
Q |
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| T |
9213949 |
tgatactttgtcttgtacacatttacagcttcggcatgagctagaagttggtagtgtgtgactatatagggctcaatcgcagaatcaccaccggtgcaat |
9213850 |
T |
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| Q |
163 |
tgggattaaaccaagaagagcatcgacctggtgccattgcgccatttgcatatccattttgactgtaactccatggt |
239 |
Q |
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| T |
9213849 |
ttggattcaaccaactagaacaacgacctggtgccattcgtccatttgcatagccattttgactgtaactccatggt |
9213773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 160
Target Start/End: Complemental strand, 30361145 - 30361048
Alignment:
| Q |
63 |
tgatatttagtcttgtacacattaacagctgctgcatgagctagaagttgataatgtgcaactaaataaggttcggttccagaatcaccgccggtgca |
160 |
Q |
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| T |
30361145 |
tgatattttgtcttgtaaacttgaacagcggctgcatgagcaaggagtaggtgatgtgcaactaaatatggctctgtccccgaatcaccaccggtgca |
30361048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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