View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9343_low_5 (Length: 240)
Name: NF9343_low_5
Description: NF9343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9343_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 28836668 - 28836468
Alignment:
| Q |
19 |
attagggtctaaggccttgtccacgagctccaagtgcatgcctctctcatgcagtttccatgactgttaagtgaaattcaaaaactatatgttaaaatat |
118 |
Q |
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| T |
28836668 |
attagggtctaaggccttgtccacgagctccaagtgcatgcctctctcatgcagtttccatgactgttaagtgaaattcaaaaaccatatg--------- |
28836578 |
T |
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| Q |
119 |
tatgatatacttcatcctgtcctttttacaagagacctttatagttatgacttgtgagaattttcttacttttttaagaaggtattcaccatcttcatca |
218 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28836577 |
----atatacttcatcctgtcctttttataagagacctttatagttatgacttgtgagaattttcttacttttttaagaaggtattcaccatcttcatca |
28836482 |
T |
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| Q |
219 |
tcttcctttgcttc |
232 |
Q |
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||||||||| |||| |
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| T |
28836481 |
tcttcctttacttc |
28836468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 28827328 - 28827228
Alignment:
| Q |
20 |
ttagggtctaaggccttgtccacgagctccaagtgcatgcctctctcatgcagtttccatgactgttaagtgaaattcaaaaactatatgttaaaatatt |
119 |
Q |
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|||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||| || || ||||||| ||||| | ||||||||||||||| |
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| T |
28827328 |
ttagggtctaagaccttgtcgactagctccaagtgcatgcctctctcatgcagtttccatgtctattcagtgaaaatcaaaggccatatgttaaaatatt |
28827229 |
T |
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| Q |
120 |
a |
120 |
Q |
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| T |
28827228 |
a |
28827228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 28831257 - 28831198
Alignment:
| Q |
19 |
attagggtctaaggccttgtccacgagctccaagtgcatgcctctctcatgcagtttcca |
78 |
Q |
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| T |
28831257 |
attatggtctaaggccttgtccacaagctccaaatgcatgcctctcttatgcagtttcca |
28831198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 28839298 - 28839247
Alignment:
| Q |
22 |
agggtctaaggccttgtccacgagctccaagtgcatgcctctctcatgcagt |
73 |
Q |
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|||||| ||| |||||||||||| |||||| ||||||||||||||||||||| |
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| T |
28839298 |
agggtccaagaccttgtccacgacctccaaatgcatgcctctctcatgcagt |
28839247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 28827054 - 28827002
Alignment:
| Q |
159 |
atagttatgacttgtgagaattttcttacttttttaagaaggtattcaccatc |
211 |
Q |
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|||||| |||||||||||||||| ||||| |||| ||||||| |||||||||| |
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| T |
28827054 |
atagttttgacttgtgagaatttgcttaccttttgaagaaggaattcaccatc |
28827002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 100
Target Start/End: Original strand, 1465981 - 1466059
Alignment:
| Q |
22 |
agggtctaaggccttgtccacgagctccaagtgcatgcctctctcatgcagtttccatgactgttaagtgaaattcaaa |
100 |
Q |
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|||||| ||| |||||||||||||| |||| ||||||||||||||||||||||||||| ||||| || |||| ||||| |
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| T |
1465981 |
agggtccaagaccttgtccacgagcaccaaacgcatgcctctctcatgcagtttccatgtctgtttagcgaaagtcaaa |
1466059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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