View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9343_low_9 (Length: 239)
Name: NF9343_low_9
Description: NF9343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9343_low_9 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 16 - 239
Target Start/End: Original strand, 44552176 - 44552399
Alignment:
| Q |
16 |
acttgatccaaaatttcaaacataaccaaaatactttaccttgggattattatttaattaagtttggtttaattagttttacttcgtttactgaaatgaa |
115 |
Q |
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| T |
44552176 |
acttgatccaaaatttcaaacataaccaaaatactttaccttgggattattatttaattaagtttggtttaattagttttacttcgtttactgaaatgaa |
44552275 |
T |
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| Q |
116 |
acctactacattttaaattaagtatcttcttttgcagtgattaagggtgcgtttaaaaataattacaagtgataattagataatgtgacataactcgtaa |
215 |
Q |
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| T |
44552276 |
acctactacgttttaaattaagtatcttcttttgcagtgattaagggtgcgtttaaaaataattacaagtgatatttagataatgtgacataactcgtaa |
44552375 |
T |
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| Q |
216 |
ttctattgaccatgaacgtgacct |
239 |
Q |
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|||||||||||||||||||||||| |
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| T |
44552376 |
ttctattgaccatgaacgtgacct |
44552399 |
T |
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