View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9344_high_12 (Length: 293)
Name: NF9344_high_12
Description: NF9344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9344_high_12 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 293
Target Start/End: Original strand, 37173236 - 37173511
Alignment:
| Q |
18 |
ttctcctcaccgacaagcctcccacgtcgtgttttttcatttcagatacgcttttcagtatcgaaatacaaaggagaagcatcaatactgtgtcttcttc |
117 |
Q |
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| T |
37173236 |
ttctcctcaccgacaagcctcccacgtcgtgttttttcatttcagatacgcttttcagtatcgaaatacaaaggagaagcatcaatactgtgtcttcttc |
37173335 |
T |
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| Q |
118 |
gggcaatacttcgacaaccaatagcctccaatttagtagagctgttgcttttccatccgggttatcttctgtgaaacgaactagtgttagaaaacccttc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37173336 |
gggcaatacttcgacaaccaatagcctccaatttagtagagctgttgcttttccatccgggttatcttctgtgaaacgaactagtgttagaaaacccttc |
37173435 |
T |
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| Q |
218 |
tcatcctcctctaactcacgcttcagttcttcatttttgttgtttagcattgtctttttcacttgatattgcattt |
293 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37173436 |
tcatcctcctctaactcacgcttcatttcttcatttttgttgtttagcattgtctttttcacttgatattgcattt |
37173511 |
T |
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