View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9344_low_10 (Length: 476)
Name: NF9344_low_10
Description: NF9344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9344_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 17 - 462
Target Start/End: Complemental strand, 29338116 - 29337679
Alignment:
| Q |
17 |
cacagacattgaaaagaatagcatatttcatcatatcttctcactgttttctactgttattattgtcatcgaaacgaaagagggcccccggtattttatt |
116 |
Q |
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| T |
29338116 |
cacagacattgaaaagaatagcatatttcatcatatcttctcactgttttctactgttattattgtcatcgaaacgaaagagggcccccggtattttatt |
29338017 |
T |
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| Q |
117 |
tgatacgtac----aaattgaagataaaattttattgtacatccgttagacccgtgatgttgtatgtggtaaaaaaccatcgcgagaataaaatacgcgt |
212 |
Q |
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| T |
29338016 |
ttatacgtacgtacaaattgaagataaaattttattgtacagccgttagacccgcgatgttgtatgtggtaaaaaaccatcgcgagaataaaatacgcgt |
29337917 |
T |
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| Q |
213 |
agtaaagatgagaatactgtgttgaatgtgtggtaagataagacgtgataagatagagaataataacattagagaaagagttgaggtagcacttaccata |
312 |
Q |
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| T |
29337916 |
agtagagatgagaatactgtgttg---------taagataagacgtgataagatagagaataataccattagagaaagagttgaggtagcacttaccgta |
29337826 |
T |
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| Q |
313 |
gaaacgatggtggaaactcggcatagatgctttgtgcatgtggaggaaagacctcatgtggattgtgtaggaactaggaagaatagtagaccagatcatg |
412 |
Q |
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| T |
29337825 |
gaaacgatggtggaaactcggtatagatgctttgtgcatgtggaggaaagacc---tgtggattgtgtaggaactaggaagaatagtagaccagatcatg |
29337729 |
T |
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| Q |
413 |
gagggtagtcaaattgcaaaaggtagaccaagaaaaactataaagaaaga |
462 |
Q |
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| T |
29337728 |
gagggtagtcaaattgcaaaaggtagaccaagaaaaactataaagaaaga |
29337679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 275 - 353
Target Start/End: Original strand, 28020944 - 28021022
Alignment:
| Q |
275 |
ataacattagagaaagagttgaggtagcacttaccatagaaacgatggtggaaactcggcatagatgctttgtgcatgt |
353 |
Q |
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| T |
28020944 |
ataacattagagaaagagttggggtagcacttatcgtagaaaagatggtggaaacttggcttaggtggtttgggcatgt |
28021022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 367
Target Start/End: Original strand, 41948498 - 41948588
Alignment:
| Q |
277 |
aacattagagaaagagttgaggtagcacttaccatagaaacgatggtggaaactcggcatagatgctttgtgcatgtggaggaaagacctc |
367 |
Q |
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| T |
41948498 |
aacattagagtgagagttggcgtagcacttacaatagaaaagatggtggaaactaggcttaagtggtttgggcatgtagagagaagacctc |
41948588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 334
Target Start/End: Original strand, 39811900 - 39811996
Alignment:
| Q |
238 |
atgtgtggtaagataagacgtgataagat-agagaataataacattagagaaagagttgaggtagcacttaccatagaaacgatggtggaaactcggc |
334 |
Q |
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| T |
39811900 |
atgtgtggtaagactagacgtgataggattaga-aatgacaacattagagagagagttggggcagcacctatcatagaaaaaatggtgaaaactcggc |
39811996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 330
Target Start/End: Complemental strand, 219826 - 219700
Alignment:
| Q |
204 |
aatacgcgtagtaaagatgagaatactgtgttgaatgtgtggtaagataagacgtgataagatagagaataataacattagagaaagagttgaggtagca |
303 |
Q |
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| T |
219826 |
aataagcgtagcaaagatgagaatgttgcgttggatgcgtgttaagacaagacgagataagattacgaatgacaacattggagagagagttggggtagca |
219727 |
T |
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| Q |
304 |
cttaccatagaaacgatggtggaaact |
330 |
Q |
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| T |
219726 |
cctatcgttgaaaaggtggtggaaact |
219700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 357
Target Start/End: Complemental strand, 38903988 - 38903940
Alignment:
| Q |
309 |
catagaaacgatggtggaaactcggcatagatgctttgtgcatgtggag |
357 |
Q |
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| T |
38903988 |
catagaaaagatggtggaaactcggcttagttggtttgagcatgtggag |
38903940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 277 - 353
Target Start/End: Original strand, 38868864 - 38868940
Alignment:
| Q |
277 |
aacattagagaaagagttgaggtagcacttaccatagaaacgatggtggaaactcggcatagatgctttgtgcatgt |
353 |
Q |
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||||||| ||| || |||| ||||||| || |||||||| ||||||||||||||||| ||| || |||| |||||| |
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| T |
38868864 |
aacattaaagagagggttggagtagcacctatcatagaaaagatggtggaaactcggcttaggtggtttgggcatgt |
38868940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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