View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9344_low_11 (Length: 460)
Name: NF9344_low_11
Description: NF9344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9344_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 17 - 454
Target Start/End: Complemental strand, 47451297 - 47450861
Alignment:
| Q |
17 |
ataaattgcaagaaataacagttttgatagcagtaaaactcatcccctatactcactctcttgaatactttcatggatgaaaaggagaatgcatgaaatg |
116 |
Q |
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| T |
47451297 |
ataaattgcaagaaataacagttttgatagcagtaaaactcatcccctatactcactct--tgaatactttcatggatgaaaaggagaatgcatgaaatg |
47451200 |
T |
|
| Q |
117 |
taactctcctcaagtatatataaaatacatctaaatgatgcattttggataaatgcatcatcatgcatggatatattgtgatttcggagtaatactttct |
216 |
Q |
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| T |
47451199 |
taactcccctcaagtatatataaaatacatctaaatgatgcattttggataaatgcatcatcatgcatggatatattgtgatttcggagtaatactttct |
47451100 |
T |
|
| Q |
217 |
atttttggataaatgtcatttctaagacttgataaaaacattagaaagttcatacgttaataaagttacacaatggagtaaacaggtgtatacaagtaaa |
316 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47451099 |
atttttggataaatgtcatatctaagacttgataaaaacattagaaagttcatacgttaataaagttacacaatggagtaaacaggtgtatacaagtaaa |
47451000 |
T |
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| Q |
317 |
caacaaaacctttca-aaaatataaacaaacaaatgtcatatgatgcatatgttgtagaacaacatagtatattaaatagcaagacgtgtccattaagtt |
415 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47450999 |
caacaaaacctttcaaaaaaaataaacaaacaaatgtcatatgatgcatatgttgtagaacaacatagtatattaaatagcaagacgtgtccattaagtt |
47450900 |
T |
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| Q |
416 |
tctttttggcacattcttgatgaatctagtacctccaaa |
454 |
Q |
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| T |
47450899 |
tctttttggcacattcttgatgaatctagtacctccaaa |
47450861 |
T |
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