View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9344_low_15 (Length: 452)
Name: NF9344_low_15
Description: NF9344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9344_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 429; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Complemental strand, 44892786 - 44892346
Alignment:
| Q |
1 |
aaactctaaaatgttgactttgttatgtcaaatgagcacgaagaataggaactcaccaatgcgtttttgtggatgattttttgcaatcctattgtagaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
44892786 |
aaactctaaaatgttgactttgttatgtcaaatgagcacgaagaataggaactcaccaatgcgtttttgtggatgattatttgcaatcctattgtagaca |
44892687 |
T |
|
| Q |
101 |
ctgcgccaattgggtcgtgcaaagtaagacgcgatgggtgttccatttaagatatccaaaccttttttagcatggtttagtgattgaaggacagtaacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
44892686 |
ctgcgccaattgggtcgtgcaaagtaagacgcgatgggtgttccatttaagatatccaaaccttctttagcatggtttagtgattgaaggacagtaacaa |
44892587 |
T |
|
| Q |
201 |
gagcagagcgagcatcaccgtcttcatatacactagtcaagtgactgtgtatctcaattactttcttgtgatcctcttcagccacctcatttattacccc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44892586 |
gagcagagcgagcatcaccgtcttcatatacactagtcaagtgactgtgtatctcaattactttcttgtgatcctcttcagccacctcatttattacccc |
44892487 |
T |
|
| Q |
301 |
tttaaaccaatcaaagaaaccttgttcaccagccatccagtaaaaataagcctttctagttttaaagttactcaaatcagttttcttgtgttgtgatggt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
44892486 |
tttaaaccaatcaaagaaaccttgttcaccagccatccagtaaaaataagcctttctagttttaaagttactcaaatcagttttcttgtgttctgatggt |
44892387 |
T |
|
| Q |
401 |
cttgatgatttaccaattgttccctcctccatattagtgat |
441 |
Q |
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| T |
44892386 |
cttgatgatttaccaattgttccctcctccatattagtgat |
44892346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 45 - 426
Target Start/End: Complemental strand, 44901395 - 44901014
Alignment:
| Q |
45 |
ataggaactcaccaatgcgtttttgtggatgattttttgcaatcctattgtagacactgcgccaattgggtcgtgcaaagtaagacgcgatgggtgttcc |
144 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||| | |||||||| |||| ||| || |||| ||||||| |||| || ||||||||| |
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| T |
44901395 |
ataggaactcaccaatgcgtttttgtggatgattaagtgcaatgcgcttgtagacgctgcaccattttggtctagcaaagtgagacttgacgggtgttcc |
44901296 |
T |
|
| Q |
145 |
atttaagatatccaaaccttttttagcatggtttagtgattgaaggacagtaacaagagcagagcgagcatcaccgtcttcatatacactagtcaagtga |
244 |
Q |
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| | |||||||||| ||| |||||||||||||||||||||||||| | || || ||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
44901295 |
agtcaagatatccacaccatttttagcatggtttagtgattgaagcatagcaataagagcagattgagcatcaccgtcttcatatacactagtcaagtga |
44901196 |
T |
|
| Q |
245 |
ctgtgtatctcaattactttcttgtgatcctcttcagccacctcatttattacccctttaaaccaatcaaagaaaccttgttcaccagccatccagtaaa |
344 |
Q |
| |
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||||| |||||||||||| || | | || ||||| |||||||||| ||||| ||||||||||||||||||||||||||| | |||| ||| |||| |
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| T |
44901195 |
ctgtggatctcaattactctcctacggtcttcttccaccacctcattcattacatctttaaaccaatcaaagaaaccttgtttcgccgccacccaataaa |
44901096 |
T |
|
| Q |
345 |
aataagcctttctagttttaaagttactcaaatcagttttcttgtgttgtgatggtcttgatgatttaccaattgttccctc |
426 |
Q |
| |
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||||||||||||||||||| |||||| | ||| | ||||||||| ||||||||| ||||| |||||| ||| ||||||||| |
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| T |
44901095 |
aataagcctttctagttttgaagttatttaaaccggttttcttgcgttgtgatgatcttggtgatttgccacctgttccctc |
44901014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 40 - 429
Target Start/End: Complemental strand, 44918150 - 44917761
Alignment:
| Q |
40 |
gaagaataggaactcaccaatgcgtttttgtggatgattttttgcaatcctattgtagacactgcgccaattgggtcgtgcaaagtaagacgcgatgggt |
139 |
Q |
| |
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||||||| ||||||||||| |||| ||||||||||||| |||||| | ||||||||||| |||||||| ||| ||||||| |||| || | || |
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| T |
44918150 |
gaagaatgagaactcaccaacgcgtgtttgtggatgattaagtgcaatgcgcttgtagacactacgccaattaggtttagcaaagtgagacttgacgcgt |
44918051 |
T |
|
| Q |
140 |
gttccatttaagatatccaaaccttttttagcatggtttagtgattgaaggacagtaacaagagcagagcgagcatcaccgtcttcatatacactagtca |
239 |
Q |
| |
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|||||| | |||||||| ||| ||||||||||| || |||||||| || | || || ||||||||||||||||||||| |||||||| |||||||| |
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| T |
44918050 |
gttccagagacgatatccacaccatttttagcatgattaagtgattggagcatagcaataagagcagagcgagcatcaccctcttcataaacactagtac |
44917951 |
T |
|
| Q |
240 |
agtgactgtgtatctcaattactttcttgtgatcctcttcagccacctcatttattacccctttaaaccaatcaaagaaaccttgttcaccagccatcca |
339 |
Q |
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| | | |||||| |||||||||| | | ||||| ||||||||||||||||| ||||| ||||||||||||||||| |||| ||||| | || | ||| |
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| T |
44917950 |
aataattgtgtagctcaattactcccctatgatcatcttcagccacctcattcattactcctttaaaccaatcaaatgaaccctgttctctagtaaccca |
44917851 |
T |
|
| Q |
340 |
gtaaaaataagcctttctagttttaaagttactcaaatcagttttcttgtgttgtgatggtcttgatgatttaccaattgttccctcctc |
429 |
Q |
| |
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||||||||||||| | ||||||||||| || ||||| | ||| ||||||||||||||||||| | |||||||| | ||||||||||||| |
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| T |
44917850 |
gtaaaaataagccctcttagttttaaagctattcaaaccggttctcttgtgttgtgatggtctcggtgatttactacttgttccctcctc |
44917761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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