View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9344_low_21 (Length: 396)
Name: NF9344_low_21
Description: NF9344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9344_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 131; Significance: 7e-68; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 35 - 192
Target Start/End: Complemental strand, 36685022 - 36684867
Alignment:
| Q |
35 |
atgactttataattttgataattttgattagggattatatatgactcttaaccattgtaccaagaaacctgggaggctactattttggagtacttcaagc |
134 |
Q |
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| T |
36685022 |
atgactttataattttgataattttgattagggcttatat--gacccttaaccattgtaccaagaaagctggtaggctactattttggagtacttcaagc |
36684925 |
T |
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| Q |
135 |
ctcctcacatggaacacttcaacttgcagatgactatcatcagagttacaaaaccttt |
192 |
Q |
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| T |
36684924 |
ctcctcacatggaacacttcaacttgcagatgactatcatcagagttacaaaaccttt |
36684867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 287 - 380
Target Start/End: Complemental strand, 36684191 - 36684102
Alignment:
| Q |
287 |
accagatcaatgtttatgggagtgtttgatatataatggcttgaaggtacgtagggaatttcaacgaatcattgccacaaaaactacccaccaa |
380 |
Q |
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| T |
36684191 |
accagatcaatgtttatgggagtgtttgaga----atggcttgaaggtacgtagggaatttcaatgaatcattgccacaaaaactacccaccaa |
36684102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 36684241 - 36684198
Alignment:
| Q |
187 |
acctttaaagtcaaaacgtttataataaggtaactacaacaagt |
230 |
Q |
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| T |
36684241 |
acctttaaagtcaaaacgtttataataaggtaactacaacaagt |
36684198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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