View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9344_low_25 (Length: 316)
Name: NF9344_low_25
Description: NF9344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9344_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 17 - 305
Target Start/End: Original strand, 40522311 - 40522599
Alignment:
| Q |
17 |
aggtttaacctaaaccatgcagcaatacagtccttatgaaaaaagtgaccacaatcaggtaagaaacgcaaccactctgaatctttataatctcccaaac |
116 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
40522311 |
aggtttgacctaaaccatgcagcaatacagtccttatgaaaaaagtgaccacaatcaggtaagaaacgcaaccactctaaatctttataatctcccaaac |
40522410 |
T |
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| Q |
117 |
aaattgagcaaatgagtgatgttgaatcatcaggcttatgaaacttgacttgggagtacaacaaaatggggtaactgttcggattaacgtctctttcttc |
216 |
Q |
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| T |
40522411 |
aaattgagcaaatgagtgatgttgaatcatcaggcttatgaaacttgacttgggagtacaacaaaatggggtaactgttcggattaacgtctctttcttc |
40522510 |
T |
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| Q |
217 |
ttcacatacttcaatattcacttcagtagtatgatctgtgttagaattgatgccactagattgcagcctgttttgccaataacacgaaa |
305 |
Q |
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| T |
40522511 |
ttcacatacttcaatattcacttcagtagtatgatctgtgttagaattgatgccactagattgcatcctgttttgccaataacatgaaa |
40522599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 17 - 192
Target Start/End: Original strand, 40526220 - 40526395
Alignment:
| Q |
17 |
aggtttaacctaaaccatgcagcaatacagtccttatgaaaaaagtgaccacaatcaggtaagaaacgcaaccactctgaatctttataatctcccaaac |
116 |
Q |
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||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40526220 |
aggtttagcctgaaccatgtagcaatacagtccttatgaaaaaagtgaccacaatcaggtaagaaacgcaaccactctgaatctttataatctcccaaac |
40526319 |
T |
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| Q |
117 |
aaattgagcaaatgagtgatgttgaatcatcaggcttatgaaacttgacttgggagtacaacaaaatggggtaact |
192 |
Q |
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||||||||||||||||||||||||||||| | | ||||||||||||||| ||||||| ||||| ||||||||| |
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| T |
40526320 |
aaattgagcaaatgagtgatgttgaatcagccttatgatgaaacttgacttgtgagtacagcaaaacggggtaact |
40526395 |
T |
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