View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9344_low_30 (Length: 249)
Name: NF9344_low_30
Description: NF9344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9344_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 6483960 - 6484195
Alignment:
| Q |
18 |
gtatcaaaagagggaattcttaggaattcaaatactgaaaattgagtgcttttatggtagaatgttgggaaacattctaaacattttgatgag------- |
110 |
Q |
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| T |
6483960 |
gtatcaaaagagggaattcttaggaattcaaagactgaaaattgagtgcttttatggtagaatgttgggaaacattctaaacattttgatgagtaaaaat |
6484059 |
T |
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| Q |
111 |
-------tatcttgttgaaagctaattccttataacctgtgtatttctttgttagaaactcattgatagtggatcgaagagttgctatttccctcaaatg |
203 |
Q |
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| T |
6484060 |
cattgagtatcttgttgaaagctaattccctataacctgtgtatttctttgttagaaactcattgacagtggatcgaagagttgctatttccctcaaatg |
6484159 |
T |
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| Q |
204 |
taggtcaaatttggtaaacaaatatagttgtctgtg |
239 |
Q |
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| T |
6484160 |
taggtcaaatttggtaaacaaatatagctgtgtgtg |
6484195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 217
Target Start/End: Complemental strand, 38860482 - 38860380
Alignment:
| Q |
115 |
ttgttgaaagctaattccttataacctgtgtatttctttgttagaaactcattgatagtggatcgaagagttgctatttccctcaaatgtaggtcaaatt |
214 |
Q |
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| T |
38860482 |
ttgttgaaggctaatttcttataactattgtatctctttgtaagaaactatttgatagtggattggagagctgctctctccctcaattgtaggtcaaatt |
38860383 |
T |
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| Q |
215 |
tgg |
217 |
Q |
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| T |
38860382 |
tgg |
38860380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 4055854 - 4055813
Alignment:
| Q |
143 |
tgtatttctttgttagaaactcattgatagtggatcgaagag |
184 |
Q |
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| T |
4055854 |
tgtatctctttgtaagaaactcattgatagtggattgaagag |
4055813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 183
Target Start/End: Original strand, 13121828 - 13121884
Alignment:
| Q |
126 |
taattccttataacctgtgtatttctttgttagaaactcattgatagtggatcgaaga |
183 |
Q |
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| T |
13121828 |
taatttcttgtaacctttgtatctctttgt-agaaactcattgatagtggattgaaga |
13121884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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