View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9344_low_37 (Length: 235)

Name: NF9344_low_37
Description: NF9344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9344_low_37
NF9344_low_37
[»] chr2 (2 HSPs)
chr2 (139-220)||(4421467-4421549)
chr2 (18-106)||(4421582-4421665)
[»] chr4 (1 HSPs)
chr4 (18-51)||(38260963-38260996)


Alignment Details
Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 139 - 220
Target Start/End: Complemental strand, 4421549 - 4421467
Alignment:
Q  139 gttgcttgcgttagtatattatttcttttagctcaagaaatttcaccagggtcaaagttttttaaatgat-atctgtggttaa 220  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4421549 gttgtttgcattagtatattatttcttttagctcaagaaatttcaccagggtcaaagttttttaaatgataatctgtggttaa 4421467  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 4421665 - 4421582
Alignment:
Q  18 agaagcgtatacatgcatatgtgagtgcttcggaaactatgattacatgcataggataggaagccaggattagccgaaatagtaatctc 106  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||||     ||||||||||||||||||||| ||||||||||    
T  4421665 agaagcgtatacatgcatatgtgagtgcttcgaaaactaggattacatgcat-----aggaagccaggattagccgaactagtaatctc 4421582  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 38260963 - 38260996
Alignment:
Q  18 agaagcgtatacatgcatatgtgagtgcttcgga 51  Q
    ||||||||||||||||||||||||||| ||||||    
T  38260963 agaagcgtatacatgcatatgtgagtgattcgga 38260996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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