View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9344_low_4 (Length: 674)
Name: NF9344_low_4
Description: NF9344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9344_low_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 297; Significance: 1e-166; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 316 - 655
Target Start/End: Original strand, 11838778 - 11839118
Alignment:
| Q |
316 |
ctattttcggtcctatttataagaaacatttagattaatatatttagatcaaattttaaactagattcagtaacttttgttgatcaacgtatcttttata |
415 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||| |
|
|
| T |
11838778 |
ctatttttggtcctatttataagaaacatttagattaatatatctagatcaaattttaaactagattcattaatttttgttgatcaacgtgtcttttata |
11838877 |
T |
|
| Q |
416 |
aataggaccgggg-ggtatgcagtatgcatgcttaccgcacttttggatgtgagtggatcatacccggaaccaccggatgcaaagcaaacacccgtgacg |
514 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
11838878 |
aataggaccgggggggtatgcagtatgcatgcttaccgcacttttggatgtgagtggatcatacccggaaccactggatgcaaagcaaacacccgtgacg |
11838977 |
T |
|
| Q |
515 |
agatcgctaggttggatatttggatccaaatacgccggcagaaattccttgatgcccaatgcttcaactgatatatcacaccaatagaaaaggaagtaaa |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
11838978 |
agatcgctaggttggatatttggatccaaatacgccggcagaaattccttaatgcccaatgcttcaactgacatatcacaccaatagtaaaggaagtaaa |
11839077 |
T |
|
| Q |
615 |
ttttgattccttttgaattcagatttcctagtccctaccgt |
655 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11839078 |
ttttgattccttttgaattcagatttcctagtccctaccgt |
11839118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 11838499 - 11838731
Alignment:
| Q |
18 |
aggaacatcatattgtagttctctgagatgactcaaaaaatatgtattggaaatgtcgttacttccttgaaccacaaggaaaacactgttggctaggatg |
117 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11838499 |
aggaacatcatattgtagttctctgaaatgactcaaaaaatatgtattggaaatgtcgttacttccttgaaccacaaggaaaacactgttggctaggatg |
11838598 |
T |
|
| Q |
118 |
aaattttttctaccctctccaacaattccttttagctttcctatgtattctttgaacaaaattatttgaccggacaacgatatagctgactggttaataa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11838599 |
aaattttttctaccctctccaacaattccttttagctttcctatgtattctttgaacaaaattatttgaccggacaacgatatagctgactggttaataa |
11838698 |
T |
|
| Q |
218 |
tatgatacagtgactaagttagaaaggaataag |
250 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |
|
|
| T |
11838699 |
tatgatacagtgaccaagttagaaaggaataag |
11838731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 316 - 657
Target Start/End: Complemental strand, 53276537 - 53276196
Alignment:
| Q |
316 |
ctattttcggtcctatttataagaaacatttagattaatatatttagatcaaattttaaactagattcagtaacttttgttgatcaacgtatcttttata |
415 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||| ||| ||||| ||||||||||||||||||| ||| |||||||||||||||| ||||||||| |
|
|
| T |
53276537 |
ctattttcgatcctatttataataaacatttagattaatgtatctagattaaattttaaactagattcattaatttttgttgatcaacgtgtcttttata |
53276438 |
T |
|
| Q |
416 |
aataggaccggggggtatgcagtatgcatgcttaccgcacttttggatgtgagtggatcatacccggaaccaccggatgcaaagcaaacacccgtgacga |
515 |
Q |
| |
|
|||| || ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
53276437 |
aataagatcggaaggtatgcaggatgcatgcttaccgcacttttggatgtgagtggatcatacccagaaccaccggatgcaaagcaaacacccgtgacga |
53276338 |
T |
|
| Q |
516 |
gatcgctaggttggatatttggatccaaatacgccggcagaaattccttgatgcccaatgcttcaactgatatatcacaccaatagaaaaggaagtaaat |
615 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53276337 |
gatcgctaggttggatatttggatccaaatacgccggcagaaattccttaatgcccaatgcttcaactgatatatcacaccaatagaaaaggaagtaaat |
53276238 |
T |
|
| Q |
616 |
tttgattccttttgaattcagatttcctagtccctaccgtct |
657 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
53276237 |
tttgattccttttgaattcagatttcctagtccctgccgtct |
53276196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 53276834 - 53276602
Alignment:
| Q |
18 |
aggaacatcatattgtagttctctgagatgactcaaaaaatatgtattggaaatgtcgttacttccttgaaccacaaggaaaacactgttggctaggatg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53276834 |
aggaacatcatattgtagttctctgagatgactcaaaaaatatgtattggaaatgtcgttacttccttgaaccacaaggaaaacactgttggctaggatg |
53276735 |
T |
|
| Q |
118 |
aaattttttctaccctctccaacaattccttttagctttcctatgtattctttgaacaaaattatttgaccggacaacgatatagctgactggttaataa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53276734 |
aaattttttctaccctctccaacaattccttttagctttcctatgtattctttgaacaaaattatttgaccggacaacgatatagctgactggttaataa |
53276635 |
T |
|
| Q |
218 |
tatgatacagtgactaagttagaaaggaataag |
250 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |
|
|
| T |
53276634 |
tatgatacagtgaccaagttagaaaggaataag |
53276602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 387 - 426
Target Start/End: Complemental strand, 12062607 - 12062568
Alignment:
| Q |
387 |
aacttttgttgatcaacgtatcttttataaataggaccgg |
426 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
12062607 |
aacttttgttgatcaaaatatcttttataaataggaccgg |
12062568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 176
Target Start/End: Complemental strand, 8233109 - 8232988
Alignment:
| Q |
55 |
aaatatgtattggaaatgtcgttacttccttgaaccacaaggaaaacactgttggctaggatgaaattttttctaccctctccaacaattccttttagct |
154 |
Q |
| |
|
|||||||| |||||||| || ||||| || ||||||||||||| ||| || || | |||||| ||| |||| | |||||||||| | || ||| | |
|
|
| T |
8233109 |
aaatatgtgttggaaatatcattactgcccaataccacaaggaaaagactatttgccaagatgaagtttgttctgtcttctccaacaagttctcttaatt |
8233010 |
T |
|
| Q |
155 |
ttcctatgtattctttgaacaa |
176 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
8233009 |
ttcctatgtattctttgaacaa |
8232988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 587
Target Start/End: Complemental strand, 8243140 - 8243023
Alignment:
| Q |
470 |
ggatcatacccggaaccaccggatgcaaagcaaacacccgtgacgagatcgctaggttggatatttggatccaaatacgccggcagaaattccttgatgc |
569 |
Q |
| |
|
|||||||| || | |||||||||||||||| ||| || ||| | | || ||||| |||| ||||||||||||||| || || ||| |||| || |||| |
|
|
| T |
8243140 |
ggatcatatcctgcaccaccggatgcaaagttaacgccagtggccaattcactaggctggagatttggatccaaatatgctggtagatattctttaatgc |
8243041 |
T |
|
| Q |
570 |
ccaatgcttcaactgata |
587 |
Q |
| |
|
| ||| |||||||||||| |
|
|
| T |
8243040 |
ctaattcttcaactgata |
8243023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University