View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9344_low_42 (Length: 220)
Name: NF9344_low_42
Description: NF9344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9344_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 17 - 202
Target Start/End: Original strand, 9197646 - 9197831
Alignment:
| Q |
17 |
gagggagacagtgataattaatcggaaagggtgaaaatcagttatggagctacaatgagagagacaaactaaaacccaacatgaagaaagaaatcatgtg |
116 |
Q |
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| T |
9197646 |
gagggagacagtgataattaatcggaaagggtgaaaatcagtgatggagctacaatgagagagacaaactgaaacccaacatgaagaaagaaatcatgtg |
9197745 |
T |
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| Q |
117 |
ggctaacagacacaataatcacatgagctgtttaatgaataatttttggcttttagatcaattgatatagacggttaggatttggt |
202 |
Q |
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| T |
9197746 |
ggctaacagacacaataatcacatgagctgtttaatgaataatttctggcttttagatcaaatgatatagacggttaggatttggt |
9197831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 9197606 - 9197655
Alignment:
| Q |
33 |
attaatcggaaagggtgaaaatcagttatggagctacaatgagagagaca |
82 |
Q |
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| T |
9197606 |
attaattggagagggtgaaaatcagtgatggagctgcaatgagggagaca |
9197655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 17 - 202
Target Start/End: Original strand, 20213358 - 20213543
Alignment:
| Q |
17 |
gagggagacagtgataattaatcggaaagggtgaaaatcagttatggagctacaatgagagagacaaactaaaacccaacatgaagaaagaaatcatgtg |
116 |
Q |
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| T |
20213358 |
gagggagacagtgataattaatcggaaagggtgaaaatcagtgatggagctacaatgagagagacaaactgaaacccaacatgaagaaagaaatcatgtg |
20213457 |
T |
|
| Q |
117 |
ggctaacagacacaataatcacatgagctgtttaatgaataatttttggcttttagatcaattgatatagacggttaggatttggt |
202 |
Q |
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| T |
20213458 |
ggctaacagacacaataatcacatgagctgtttaatgaataatttctggcttttagatcaaatgatatagacggttaggatttggt |
20213543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 32 - 199
Target Start/End: Complemental strand, 40872357 - 40872190
Alignment:
| Q |
32 |
aattaatcggaaagggtgaaaatcagttatggagctacaatgagagagacaaactaaaacccaacatgaagaaagaaatcatgtgggctaacagacacaa |
131 |
Q |
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||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40872357 |
aattaatcggaaagggtgaaaatcagtgatgaagctacaatgagagagacaaactcaaacccaacatgaagaaagaaatcatgtgggctaacagacacaa |
40872258 |
T |
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| Q |
132 |
taatcacatgagctgtttaatgaataatttttggcttttagatcaattgatatagacggttaggattt |
199 |
Q |
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| T |
40872257 |
taatcacatgagcagtttaatgaataatttctggcttttagatcaaatgatataaacggttaggattt |
40872190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 20213318 - 20213367
Alignment:
| Q |
33 |
attaatcggaaagggtgaaaatcagttatggagctacaatgagagagaca |
82 |
Q |
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|||||| ||| ||||||||||||||| |||||||| ||||||| |||||| |
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| T |
20213318 |
attaattggagagggtgaaaatcagtgatggagctgcaatgagggagaca |
20213367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 33 - 202
Target Start/End: Complemental strand, 20431914 - 20431745
Alignment:
| Q |
33 |
attaatcggaaagggtgaaaatcagttatggagctacaatgagagagacaaactaaaacccaacatgaagaaagaaatcatgtgggctaacagacacaat |
132 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20431914 |
attaatcggaaagggtgaaaatcagtgatggagctacaatgagagagacaaactcatacccaacatgaagaaagaaatcatgtgggctaacagacacaat |
20431815 |
T |
|
| Q |
133 |
aatcacatgagctgtttaatgaataatttttggcttttagatcaattgatatagacggttaggatttggt |
202 |
Q |
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| T |
20431814 |
aatcacatgagctgtttaatgaataatttctggcttttagatcaaatgatatagacggttaggatttggt |
20431745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 33 - 143
Target Start/End: Original strand, 45818524 - 45818634
Alignment:
| Q |
33 |
attaatcggaaagggtgaaaatcagttatggagctacaatgagagagacaaactaaaacccaacatgaagaaagaaatcatgtgggctaacagacacaat |
132 |
Q |
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|||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45818524 |
attaatcggaaagggtgaaaatcagtgatgaagctacaatgagagagacaaactcaaacccaacatgaagaaagaaatcatgtgggctaacagacacaat |
45818623 |
T |
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| Q |
133 |
aatcacatgag |
143 |
Q |
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||||||||||| |
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| T |
45818624 |
aatcacatgag |
45818634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 60 - 202
Target Start/End: Complemental strand, 9750070 - 9749931
Alignment:
| Q |
60 |
atggagctacaatgagagagacaaactaaaacccaacatgaagaaagaaatcatgtgggctaacagacacaataatcacatgagctgtttaatgaataat |
159 |
Q |
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|||| |||||||||||||||||||||| |||||||||||| |||| ||||||||||| || |||||||||| |||||||||| |||||||| ||| |
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| T |
9750070 |
atggcgctacaatgagagagacaaactgaaacccaacatgtagaag---atcatgtgggcgaatagacacaatagccacatgagctctttaatgagtaaa |
9749974 |
T |
|
| Q |
160 |
ttttggcttttagatcaattgatatagacggttaggatttggt |
202 |
Q |
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| T |
9749973 |
ttctggcttttagatcaaatgatatggacggtcaggatttggt |
9749931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 115 - 202
Target Start/End: Complemental strand, 28717698 - 28717610
Alignment:
| Q |
115 |
tgggctaacagacacaataatcacatgagct-gtttaatgaataatttttggcttttagatcaattgatatagacggttaggatttggt |
202 |
Q |
| |
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||||| |||| |||||||||||||||| | | |||||||||||||||| ||||||||||||||| |||||| || ||| |||||||||| |
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| T |
28717698 |
tgggcgaacatacacaataatcacatgggtttgtttaatgaataatttctggcttttagatcaaatgatatggatggtcaggatttggt |
28717610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 28717735 - 28717699
Alignment:
| Q |
45 |
gggtgaaaatcagttatggagctacaatgagagagac |
81 |
Q |
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|||||||||||||| |||||||||||||||| ||||| |
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| T |
28717735 |
gggtgaaaatcagtgatggagctacaatgagggagac |
28717699 |
T |
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