View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9344_low_7 (Length: 606)
Name: NF9344_low_7
Description: NF9344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9344_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 519; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 19 - 583
Target Start/End: Complemental strand, 43366569 - 43366005
Alignment:
| Q |
19 |
aactcgcagcttttctctgcctgcagtaatgccggtgtcaactttgcaagtaaacttcatcctagactcctagctagtccttttttcatctcatcaattt |
118 |
Q |
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| T |
43366569 |
aactcgcagcttttctctgcctgcagttatgccggtgtcaactttgcaagtaaacttcatcctagactcctag----tccttttttcatctcatcaattt |
43366474 |
T |
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| Q |
119 |
aattttgattgagtgtatttatttatatttctaattgttgcagaggctaatagcaaaactcatccggaccgatacttgttaatcgcaaccagtggaggct |
218 |
Q |
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| T |
43366473 |
aattttgattgagtgtatttatttatatttctaattgttgcagaggctaatagcaaaactcatccggaccgatacttgttaatcgcaaccagtggaggct |
43366374 |
T |
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| Q |
219 |
taaatcaacagagaacaggggtaagctaagcttctttattaatgaactgtggcatttgtttgtttttgcaatccttttgatcaaataaata----taaag |
314 |
Q |
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| T |
43366373 |
taaatcaacagagaacaggggtaagctaagcttctttattaatgaactgtggcatttgtttgtttttgcaatccttttgatcaaataaataaatataaag |
43366274 |
T |
|
| Q |
315 |
gaaggagttcagtgaggttaaagtattacttggaatatgtatatctttctttatgtaaccaaattgttttatttaagcatgaatagttcttccatttcat |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
43366273 |
gaaggagttcagtgaggttaaagtattacttggaatatgtatatctttctttatgtaaccaattttttttatttaagcatgaatagttcttccatttcat |
43366174 |
T |
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| Q |
415 |
tagtagacataattgcattctgagtactaatataactatgctgcaatctaaaacatgtaatatgtaatatgctataactttatttcatagagtgggaccg |
514 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43366173 |
tagtagacataattgcattctgagtactaatataactatgctgcaatctaaaacatgtaatatgtaatatgctataactttatttcatagagtgggaccc |
43366074 |
T |
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| Q |
515 |
tggtcatttgcaaaaaagtataggatgaaatttctacccaataattataggtctgcacaaattggtgat |
583 |
Q |
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| T |
43366073 |
tggtcatttgcaaaaaagtataggatgaaatttctacccaataattataggtctgcacaaattggtgat |
43366005 |
T |
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