View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9345_high_1 (Length: 442)

Name: NF9345_high_1
Description: NF9345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9345_high_1
NF9345_high_1
[»] chr4 (21 HSPs)
chr4 (287-423)||(4622952-4623078)
chr4 (137-214)||(4622798-4622875)
chr4 (136-214)||(4634232-4634311)
chr4 (376-423)||(4598518-4598565)
chr4 (136-214)||(9661802-9661881)
chr4 (136-200)||(1657656-1657721)
chr4 (136-200)||(16991835-16991900)
chr4 (136-207)||(11817028-11817100)
chr4 (137-176)||(44021652-44021691)
chr4 (135-178)||(46729004-46729047)
chr4 (21-63)||(4622682-4622724)
chr4 (136-178)||(41486561-41486603)
chr4 (139-195)||(14542601-14542658)
chr4 (136-200)||(28588524-28588589)
chr4 (376-423)||(25015751-25015798)
chr4 (138-200)||(54420800-54420863)
chr4 (136-178)||(3673609-3673651)
chr4 (139-172)||(4959664-4959697)
chr4 (136-207)||(3168996-3169068)
chr4 (135-175)||(18935648-18935688)
chr4 (136-214)||(43156725-43156805)
[»] chr5 (14 HSPs)
chr5 (136-214)||(31645778-31645857)
chr5 (136-214)||(6887264-6887343)
chr5 (136-200)||(34894002-34894067)
chr5 (136-214)||(33486656-33486735)
chr5 (136-200)||(28618567-28618632)
chr5 (136-177)||(29310435-29310476)
chr5 (136-178)||(41554472-41554514)
chr5 (140-208)||(41988139-41988208)
chr5 (136-178)||(19646127-19646169)
chr5 (134-171)||(2415393-2415430)
chr5 (136-208)||(41357993-41358066)
chr5 (136-207)||(8812238-8812310)
chr5 (136-208)||(15710495-15710570)
chr5 (138-178)||(37424979-37425019)
[»] chr1 (13 HSPs)
chr1 (139-214)||(27469821-27469897)
chr1 (136-214)||(22344998-22345077)
chr1 (134-208)||(52839378-52839453)
chr1 (138-200)||(6212974-6213037)
chr1 (149-214)||(14717341-14717407)
chr1 (137-179)||(44514077-44514119)
chr1 (136-200)||(30853869-30853934)
chr1 (136-208)||(38646539-38646612)
chr1 (136-206)||(13691844-13691916)
chr1 (134-178)||(52839507-52839551)
chr1 (136-177)||(5832220-5832261)
chr1 (136-200)||(33703595-33703660)
chr1 (136-172)||(44562835-44562871)
[»] chr7 (17 HSPs)
chr7 (136-214)||(40775216-40775295)
chr7 (136-179)||(28015341-28015384)
chr7 (138-205)||(41748589-41748657)
chr7 (136-178)||(24045318-24045360)
chr7 (136-178)||(47749720-47749762)
chr7 (137-178)||(16263373-16263414)
chr7 (136-200)||(24470358-24470423)
chr7 (136-200)||(24475306-24475371)
chr7 (139-172)||(47156388-47156421)
chr7 (138-178)||(23732481-23732521)
chr7 (136-175)||(30992909-30992948)
chr7 (136-197)||(38649444-38649506)
chr7 (151-207)||(23177683-23177740)
chr7 (139-172)||(25855309-25855342)
chr7 (139-200)||(43483558-43483619)
chr7 (136-200)||(49166890-49166955)
chr7 (134-178)||(35141837-35141881)
[»] chr3 (14 HSPs)
chr3 (136-214)||(1165482-1165561)
chr3 (136-200)||(20201144-20201209)
chr3 (136-200)||(20203326-20203391)
chr3 (136-214)||(22844000-22844079)
chr3 (136-214)||(42106060-42106139)
chr3 (136-214)||(43029632-43029711)
chr3 (136-197)||(50460160-50460222)
chr3 (136-208)||(1220301-1220374)
chr3 (136-200)||(41882494-41882559)
chr3 (136-200)||(50519753-50519818)
chr3 (136-214)||(913404-913483)
chr3 (136-194)||(1806546-1806605)
chr3 (135-200)||(43839602-43839667)
chr3 (136-200)||(22286835-22286900)
[»] chr2 (26 HSPs)
chr2 (136-214)||(3390381-3390460)
chr2 (376-423)||(18805913-18805960)
chr2 (136-214)||(25771394-25771473)
chr2 (136-197)||(6089859-6089921)
chr2 (136-214)||(27024225-27024304)
chr2 (136-214)||(40125338-40125417)
chr2 (137-206)||(3464916-3464986)
chr2 (137-207)||(25237413-25237484)
chr2 (149-206)||(31263053-31263111)
chr2 (136-178)||(37883639-37883681)
chr2 (136-200)||(10589001-10589066)
chr2 (138-179)||(15674062-15674103)
chr2 (136-200)||(25516457-25516522)
chr2 (136-200)||(41176825-41176890)
chr2 (136-200)||(44167795-44167860)
chr2 (136-175)||(7640442-7640481)
chr2 (136-179)||(16880045-16880088)
chr2 (136-178)||(26491289-26491331)
chr2 (135-200)||(43566840-43566905)
chr2 (136-200)||(3602948-3603013)
chr2 (139-172)||(9715634-9715667)
chr2 (138-179)||(17037737-17037778)
chr2 (136-200)||(25623131-25623196)
chr2 (136-200)||(27191421-27191486)
chr2 (136-200)||(27841235-27841300)
chr2 (137-178)||(42105839-42105880)
[»] chr8 (13 HSPs)
chr8 (136-200)||(31874047-31874112)
chr8 (136-207)||(9269977-9270049)
chr8 (137-200)||(13864322-13864386)
chr8 (139-214)||(16937428-16937504)
chr8 (136-207)||(23766698-23766770)
chr8 (136-178)||(10042747-10042789)
chr8 (139-195)||(44295284-44295341)
chr8 (136-214)||(15665488-15665567)
chr8 (136-197)||(9992631-9992693)
chr8 (140-178)||(27534489-27534527)
chr8 (136-178)||(37658952-37658994)
chr8 (136-200)||(36545867-36545932)
chr8 (152-196)||(39067816-39067860)
[»] chr6 (9 HSPs)
chr6 (136-208)||(32457601-32457674)
chr6 (136-214)||(16913277-16913356)
chr6 (136-175)||(19759777-19759816)
chr6 (138-200)||(33194568-33194631)
chr6 (136-178)||(12576564-12576606)
chr6 (136-177)||(32804281-32804322)
chr6 (139-199)||(34020582-34020643)
chr6 (136-176)||(548951-548991)
chr6 (136-214)||(20844956-20845036)
[»] scaffold0045 (1 HSPs)
scaffold0045 (138-200)||(9736-9799)
[»] scaffold1294 (1 HSPs)
scaffold1294 (139-214)||(729-805)
[»] scaffold0012 (1 HSPs)
scaffold0012 (151-214)||(244583-244647)


Alignment Details
Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 287 - 423
Target Start/End: Original strand, 4622952 - 4623078
Alignment:
Q  287 ttcaagattaatgaccaagctcacacagtattattggtggtcatgatgacatatgatgacatgcatcaaccaataattctgttatgttgaagaaacttcc 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||| |||||||||||||||||||    
T  4622952 ttcaagattaatgaccaagctcacacagtattattggtggtcatga----------tgacatgcatcaaccaataattctattatgttgaagaaacttcc 4623041  T
Q  387 taaaccaacgggcagagagcttagggtgtcttttaag 423  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  4623042 taaaccaccgggcagagagcttagggtgtcttgtaag 4623078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 137 - 214
Target Start/End: Original strand, 4622798 - 4622875
Alignment:
Q  137 ggtgattttggatcaaaaattgaccttaaatcacccctctttattgatgaagaagaagaaactaaagttttgctgacg 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  4622798 ggtgattttggatcaaaaattgaccttaaatcacccctctttattgatgaagaagaagaaactagagttttggtgacg 4622875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 136 - 214
Target Start/End: Complemental strand, 4634311 - 4634232
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttttgctgacg 214  Q
    |||||||||||| |||||||||||||||||||||||||||||| || ||||||| |||||||||||  |||||| |||||    
T  4634311 gggtgattttgggtcaaaaattgaccttaaatcacccctctttgatggatgaaggagaagaaactagggttttggtgacg 4634232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 376 - 423
Target Start/End: Original strand, 4598518 - 4598565
Alignment:
Q  376 aagaaacttcctaaaccaacgggcagagagcttagggtgtcttttaag 423  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||    
T  4598518 aagaaatttcctaaaccaacgggcagagagcttagggtgtcttttaag 4598565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 136 - 214
Target Start/End: Complemental strand, 9661881 - 9661802
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttttgctgacg 214  Q
    |||||||||||| ||||||||||||| |||||||||||||||| || ||||||| |||||||||||  |||||| |||||    
T  9661881 gggtgattttgggtcaaaaattgaccctaaatcacccctctttgatggatgaaggagaagaaactagggttttggtgacg 9661802  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 1657656 - 1657721
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 200  Q
    |||||||||||| ||||||||||||| ||||||||| |||||| || ||||||| |||||||||||    
T  1657656 gggtgattttgggtcaaaaattgaccctaaatcacctctctttgatggatgaaggagaagaaacta 1657721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 16991900 - 16991835
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 200  Q
    |||||||||||| ||||||||||||| ||||||||| |||||| || ||||||| |||||||||||    
T  16991900 gggtgattttgggtcaaaaattgaccctaaatcaccgctctttgatggatgaaggagaagaaacta 16991835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 136 - 207
Target Start/End: Complemental strand, 11817100 - 11817028
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagtttt 207  Q
    |||||||||||| |||||| || ||| |||| ||||||||||| || |||||||||||||||| |||||||||    
T  11817100 gggtgattttgggtcaaaacttaaccctaaaccacccctctttgatggatgaagaagaagaaattaaagtttt 11817028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 137 - 176
Target Start/End: Original strand, 44021652 - 44021691
Alignment:
Q  137 ggtgattttggatcaaaaattgaccttaaatcacccctct 176  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  44021652 ggtgattttggatcaaaaattgaccttaaaccacccctct 44021691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 178
Target Start/End: Original strand, 46729004 - 46729047
Alignment:
Q  135 agggtgattttggatcaaaaattgaccttaaatcacccctcttt 178  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||    
T  46729004 agggtgattttgggtcaaaaattgaccctaaatcacccctcttt 46729047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 4622682 - 4622724
Alignment:
Q  21 agacgacaaacacacccacgtcgcactaggacgacgaaatcac 63  Q
    ||||||||||||| |||||||||||||| ||||||||||||||    
T  4622682 agacgacaaacactcccacgtcgcactaagacgacgaaatcac 4622724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 178
Target Start/End: Complemental strand, 41486603 - 41486561
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt 178  Q
    |||||||||||||||||||||||||| ||||| ||||||||||    
T  41486603 gggtgattttggatcaaaaattgaccctaaataacccctcttt 41486561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 139 - 195
Target Start/End: Original strand, 14542601 - 14542658
Alignment:
Q  139 tgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaaga 195  Q
    ||||||||| ||||||||||||| |||||||||||||||| || ||||||| ||||||    
T  14542601 tgattttgggtcaaaaattgaccctaaatcacccctctttgatggatgaaggagaaga 14542658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 28588589 - 28588524
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctct-ttattgatgaagaagaagaaacta 200  Q
    |||||||||||| ||||||||||||| |||||||||| ||| | || ||||||| |||||||||||    
T  28588589 gggtgattttgggtcaaaaattgaccctaaatcacccttctatgatggatgaaggagaagaaacta 28588524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 423
Target Start/End: Original strand, 25015751 - 25015798
Alignment:
Q  376 aagaaacttcctaaaccaacgggcagagagcttagggtgtcttttaag 423  Q
    |||||| |||||||||||| |||||||||||||  |||||||||||||    
T  25015751 aagaaagttcctaaaccaatgggcagagagcttttggtgtcttttaag 25015798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 54420800 - 54420863
Alignment:
Q  138 gtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 200  Q
    |||||||||| ||||||||||||| |||||||||| |||||  | ||||||| |||||||||||    
T  54420800 gtgattttgggtcaaaaattgaccctaaatcacccatctttggtggatgaaggagaagaaacta 54420863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 178
Target Start/End: Complemental strand, 3673651 - 3673609
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt 178  Q
    ||||||||| || ||||||||||||| ||||||||||||||||    
T  3673651 gggtgatttggggtcaaaaattgaccctaaatcacccctcttt 3673609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 172
Target Start/End: Original strand, 4959664 - 4959697
Alignment:
Q  139 tgattttggatcaaaaattgaccttaaatcaccc 172  Q
    ||||||||||||||||||||||| ||||||||||    
T  4959664 tgattttggatcaaaaattgaccctaaatcaccc 4959697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 207
Target Start/End: Complemental strand, 3169068 - 3168996
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctctttattg-atgaagaagaagaaactaaagtttt 207  Q
    |||||||||||| |||| |||||||  ||||||||| ||||||  || ||||||||||| |||||| ||||||    
T  3169068 gggtgattttgggtcaataattgactctaaatcacctctctttggtgaatgaagaagaaaaaactagagtttt 3168996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 18935688 - 18935648
Alignment:
Q  135 agggtgattttggatcaaaaattgaccttaaatcacccctc 175  Q
    ||||||||| | | |||||||||||||||||||||||||||    
T  18935688 agggtgattctaggtcaaaaattgaccttaaatcacccctc 18935648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 214
Target Start/End: Complemental strand, 43156805 - 43156725
Alignment:
Q  136 gggtgattttggatcaaaaattga-ccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttttgctgacg 214  Q
    |||||||||||| ||||||||||| || ||||||||||||||||  | ||||||| ||||||||   |||||||| |||||    
T  43156805 gggtgattttgggtcaaaaattgacccgtaaatcacccctctttggtggatgaaggagaagaaaactaagttttggtgacg 43156725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 136 - 214
Target Start/End: Complemental strand, 31645857 - 31645778
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttttgctgacg 214  Q
    |||||||||||||||||||||||||| |||||||||||||||| || ||||||| |||||||||||  |||||| |||||    
T  31645857 gggtgattttggatcaaaaattgaccctaaatcacccctctttaatggatgaaggagaagaaactagggttttggtgacg 31645778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 136 - 214
Target Start/End: Original strand, 6887264 - 6887343
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttttgctgacg 214  Q
    |||||||||||| | ||||||||||| |||||||||||||||| || ||||||| ||||||||||| ||||||| |||||    
T  6887264 gggtgattttgggttaaaaattgaccctaaatcacccctctttgatggatgaaggagaagaaactagagttttggtgacg 6887343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 34894002 - 34894067
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 200  Q
    |||||||||||| ||||||||||||| |||||||||||||||| || ||||||| |||||||||||    
T  34894002 gggtgattttgggtcaaaaattgaccgtaaatcacccctctttgatggatgaaggagaagaaacta 34894067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 136 - 214
Target Start/End: Original strand, 33486656 - 33486735
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttta-ttgatgaagaagaagaaactaaagttttgctgacg 214  Q
    |||||||||||| ||||||||||||| ||||||||||||||||| | |||||||  ||||||| ||| |||||| |||||    
T  33486656 gggtgattttgggtcaaaaattgaccctaaatcacccctctttagtggatgaaggtgaagaaattaaggttttggtgacg 33486735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 28618632 - 28618567
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 200  Q
    |||||||||||| | ||||||||||||||||||||||||||||   |||||||| |||||||||||    
T  28618632 gggtgattttgggttaaaaattgaccttaaatcacccctctttggctgatgaaggagaagaaacta 28618567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 136 - 177
Target Start/End: Original strand, 29310435 - 29310476
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctctt 177  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  29310435 gggtgattttggatcaaaaattgaccctaaatcacccctctt 29310476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 178
Target Start/End: Complemental strand, 41554514 - 41554472
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt 178  Q
    |||||||||||||||||||||||| | ||||||||||||||||    
T  41554514 gggtgattttggatcaaaaattgatcctaaatcacccctcttt 41554472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 140 - 208
Target Start/End: Complemental strand, 41988208 - 41988139
Alignment:
Q  140 gattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttttg 208  Q
    ||||||| |||||||||||| | |||||||||||||||| || | ||||| ||||||||||| |||||||    
T  41988208 gattttgaatcaaaaattgatcctaaatcacccctctttgataggtgaaggagaagaaactagagttttg 41988139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 178
Target Start/End: Original strand, 19646127 - 19646169
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt 178  Q
    |||||||||||| ||||| |||||||||||| |||||||||||    
T  19646127 gggtgattttgggtcaaacattgaccttaaaccacccctcttt 19646169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 171
Target Start/End: Complemental strand, 2415430 - 2415393
Alignment:
Q  134 aagggtgattttggatcaaaaattgaccttaaatcacc 171  Q
    |||||||||||||| ||||||||||||| |||||||||    
T  2415430 aagggtgattttgggtcaaaaattgaccctaaatcacc 2415393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 41358066 - 41357993
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttttg 208  Q
    |||||||||||| ||||||||||||| |||||||||  ||||| ||  |||||| | ||||||||| |||||||    
T  41358066 gggtgattttgggtcaaaaattgaccctaaatcacctatctttgatctatgaaggaaaagaaactagagttttg 41357993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 207
Target Start/End: Original strand, 8812238 - 8812310
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagtttt 207  Q
    |||||||||||| | ||||||||||| || ||||||||| |||  | |||||||| |||||||||| ||||||    
T  8812238 gggtgattttgggttaaaaattgaccctatatcacccctttttggtggatgaagatgaagaaactagagtttt 8812310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 15710570 - 15710495
Alignment:
Q  136 gggtgattttggatcaaaaa--ttgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttttg 208  Q
    |||||||||||||| |||||  |||||| |||||||||| ||||| || ||||||| | ||||||||| |||||||    
T  15710570 gggtgattttggataaaaaaaattgaccataaatcacccatctttgatggatgaaggaaaagaaactagagttttg 15710495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 178
Target Start/End: Complemental strand, 37425019 - 37424979
Alignment:
Q  138 gtgattttggatcaaaaattgaccttaaatcacccctcttt 178  Q
    |||||||||| ||| ||||||||| ||||||||||||||||    
T  37425019 gtgattttgggtcagaaattgaccataaatcacccctcttt 37424979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 139 - 214
Target Start/End: Original strand, 27469821 - 27469897
Alignment:
Q  139 tgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttttgctgacg 214  Q
    ||||||||| || ||||||||||||||||||||||||||| || ||||||||||||||||||| | ||||| |||||    
T  27469821 tgattttggttcgaaaattgaccttaaatcacccctctttaatggatgaagaagaagaaactagaattttggtgacg 27469897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 136 - 214
Target Start/End: Original strand, 22344998 - 22345077
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttttgctgacg 214  Q
    |||||||||||| ||||||||||| | |||||||||||||||| || ||||||| |||||||||||  |||||| |||||    
T  22344998 gggtgattttgggtcaaaaattgaacctaaatcacccctctttgatggatgaaggagaagaaactagggttttggtgacg 22345077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 134 - 208
Target Start/End: Complemental strand, 52839453 - 52839378
Alignment:
Q  134 aagggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttttg 208  Q
    |||||||||||||| ||||||||||||| |||||||||||||||| || ||||||  |||| |||||| |||||||    
T  52839453 aagggtgattttgggtcaaaaattgaccctaaatcacccctctttaatggatgaaagagaacaaactagagttttg 52839378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 6212974 - 6213037
Alignment:
Q  138 gtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 200  Q
    |||||||||| ||||||||||||| |||||||||||||||| || || |||| |||||||||||    
T  6212974 gtgattttgggtcaaaaattgaccataaatcacccctctttgatggacgaaggagaagaaacta 6213037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 214
Target Start/End: Original strand, 14717341 - 14717407
Alignment:
Q  149 tcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttttgctgacg 214  Q
    ||||||||||||| ||||||||||||||||  | ||||||| ||||||||||| ||||||| |||||    
T  14717341 tcaaaaattgaccctaaatcacccctctttggtggatgaaggagaagaaactagagttttggtgacg 14717407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 179
Target Start/End: Original strand, 44514077 - 44514119
Alignment:
Q  137 ggtgattttggatcaaaaattgaccttaaatcacccctcttta 179  Q
    ||||||||||| ||||||||||||| |||||||||||||||||    
T  44514077 ggtgattttgggtcaaaaattgaccctaaatcacccctcttta 44514119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 30853869 - 30853934
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 200  Q
    |||||||||||| ||||||||||||||| |||||| |||||||  | ||||||| |||||||||||    
T  30853869 gggtgattttgggtcaaaaattgaccttgaatcacacctctttggtggatgaaggagaagaaacta 30853934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 38646612 - 38646539
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttttg 208  Q
    |||||||||||| ||||||||||||| |||||||| ||||||| || ||||||| |||| ||| || |||||||    
T  38646612 gggtgattttgggtcaaaaattgaccataaatcactcctctttgatagatgaaggagaaaaaattagagttttg 38646539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 206
Target Start/End: Original strand, 13691844 - 13691916
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatca-cccctcttta-ttgatgaagaagaagaaactaaagttt 206  Q
    |||||||||||| ||||||||||||| |||| || |||||||||| | |||||||||||||||| ||| ||||    
T  13691844 gggtgattttgggtcaaaaattgaccctaaaccaccccctctttagtggatgaagaagaagaaattaaggttt 13691916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 178
Target Start/End: Complemental strand, 52839551 - 52839507
Alignment:
Q  134 aagggtgattttggatcaaaaattgaccttaaatcacccctcttt 178  Q
    |||||||||||||| ||||||||||| | ||||||||||||||||    
T  52839551 aagggtgattttgggtcaaaaattgatcataaatcacccctcttt 52839507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 177
Target Start/End: Complemental strand, 5832261 - 5832220
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctctt 177  Q
    ||||||||| || ||||||||||||| |||||||||||||||    
T  5832261 gggtgatttagggtcaaaaattgaccctaaatcacccctctt 5832220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 33703595 - 33703660
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttta-ttgatgaagaagaagaaacta 200  Q
    |||||||||||| | ||||||||||| ||||||| ||||||||| | ||||||| |||| ||||||    
T  33703595 gggtgattttgggtaaaaaattgaccataaatcatccctctttagtggatgaaggagaaaaaacta 33703660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 44562835 - 44562871
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcaccc 172  Q
    |||||||||||| ||||||||||||| ||||||||||    
T  44562835 gggtgattttgggtcaaaaattgaccctaaatcaccc 44562871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 136 - 214
Target Start/End: Complemental strand, 40775295 - 40775216
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttttgctgacg 214  Q
    |||||||||||||||||||||||||| |||||||||||||||| || ||||||| |||||||| ||  |||||| |||||    
T  40775295 gggtgattttggatcaaaaattgaccctaaatcacccctctttgatggatgaaggagaagaaattagggttttggtgacg 40775216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 136 - 179
Target Start/End: Complemental strand, 28015384 - 28015341
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttta 179  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  28015384 gggtgattttggatcaaaaattgaccctaaatcacccctcttta 28015341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 138 - 205
Target Start/End: Original strand, 41748589 - 41748657
Alignment:
Q  138 gtgattttggatcaaaaattgaccttaaatcacccctctttattg-atgaagaagaagaaactaaagtt 205  Q
    |||||||||||||||||||||||| ||||||||  ||||||| || ||||||| |||||||||| ||||    
T  41748589 gtgattttggatcaaaaattgaccgtaaatcacatctctttagtgaatgaagatgaagaaactagagtt 41748657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 178
Target Start/End: Original strand, 24045318 - 24045360
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt 178  Q
    |||||||||||| ||||||||||||||||||||||| ||||||    
T  24045318 gggtgattttgggtcaaaaattgaccttaaatcaccactcttt 24045360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 178
Target Start/End: Complemental strand, 47749762 - 47749720
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt 178  Q
    |||||||||||| ||||||||||||| ||||||||||||||||    
T  47749762 gggtgattttgggtcaaaaattgaccataaatcacccctcttt 47749720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 178
Target Start/End: Complemental strand, 16263414 - 16263373
Alignment:
Q  137 ggtgattttggatcaaaaattgaccttaaatcacccctcttt 178  Q
    ||||||||||||||||||||||| | ||||||||||||||||    
T  16263414 ggtgattttggatcaaaaattgatcctaaatcacccctcttt 16263373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 24470423 - 24470358
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 200  Q
    |||||||||||| |||||||||| || ||||||||||||||||  | ||||||| |||||||||||    
T  24470423 gggtgattttgggtcaaaaattgcccctaaatcacccctctttggtggatgaaggagaagaaacta 24470358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 24475371 - 24475306
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 200  Q
    |||||||||||| |||||||||| || ||||||||||||||||  | ||||||| |||||||||||    
T  24475371 gggtgattttgggtcaaaaattgcccctaaatcacccctctttggtggatgaaggagaagaaacta 24475306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 139 - 172
Target Start/End: Complemental strand, 47156421 - 47156388
Alignment:
Q  139 tgattttggatcaaaaattgaccttaaatcaccc 172  Q
    ||||||||||||||||||||||||||||||||||    
T  47156421 tgattttggatcaaaaattgaccttaaatcaccc 47156388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 178
Target Start/End: Original strand, 23732481 - 23732521
Alignment:
Q  138 gtgattttggatcaaaaattgaccttaaatcacccctcttt 178  Q
    |||||||||  ||||||||||||||||||||||||||||||    
T  23732481 gtgattttgagtcaaaaattgaccttaaatcacccctcttt 23732521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 175
Target Start/End: Original strand, 30992909 - 30992948
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctc 175  Q
    |||||||||||| ||||||||| |||||||||||||||||    
T  30992909 gggtgattttgggtcaaaaattaaccttaaatcacccctc 30992948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 197
Target Start/End: Original strand, 38649444 - 38649506
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttta-ttgatgaagaagaagaaa 197  Q
    |||||||||||| ||||||||||||  |||||||||||| |||| |||||||||  |||||||    
T  38649444 gggtgattttgggtcaaaaattgactctaaatcacccctttttagttgatgaaggtgaagaaa 38649506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 23177683 - 23177740
Alignment:
Q  151 aaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagtttt 207  Q
    |||||||||||||||||||| | ||||| || ||||||| ||||||||||| ||||||    
T  23177683 aaaaattgaccttaaatcactcatctttaatggatgaaggagaagaaactagagtttt 23177740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 172
Target Start/End: Original strand, 25855309 - 25855342
Alignment:
Q  139 tgattttggatcaaaaattgaccttaaatcaccc 172  Q
    ||||||||||||||||||||||| ||||||||||    
T  25855309 tgattttggatcaaaaattgaccctaaatcaccc 25855342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 43483619 - 43483558
Alignment:
Q  139 tgattttggatcaaaaattgaccttaaatcacccctctttattgatgaagaagaagaaacta 200  Q
    ||||||| ||||||||||||||| |||||||| ||||||  | |||||||| | ||||||||    
T  43483619 tgattttagatcaaaaattgaccctaaatcactcctcttagtggatgaagatgcagaaacta 43483558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 49166955 - 49166890
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 200  Q
    |||||||||| | ||||||||||||| |||||||||| |||||  | ||||||| |||||||||||    
T  49166955 gggtgattttaggtcaaaaattgaccctaaatcacccatctttggtggatgaaggagaagaaacta 49166890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 35141837 - 35141881
Alignment:
Q  134 aagggtgattttggatcaaaaattgaccttaaatcacccctcttt 178  Q
    |||||||||||| | ||||||||||||| |||||||||| |||||    
T  35141837 aagggtgatttttggtcaaaaattgaccctaaatcacccttcttt 35141881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 136 - 214
Target Start/End: Original strand, 1165482 - 1165561
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttttgctgacg 214  Q
    |||||||||||| ||||||||||||| |||||||||||||||| || ||||||| |||||||||||  |||||| |||||    
T  1165482 gggtgattttgggtcaaaaattgaccctaaatcacccctctttgatggatgaaggagaagaaactagggttttggtgacg 1165561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 20201144 - 20201209
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 200  Q
    |||||||||||| ||||||||||||| ||||||||||||||||  | ||||||| |||||||||||    
T  20201144 gggtgattttgggtcaaaaattgaccctaaatcacccctctttggtggatgaaggagaagaaacta 20201209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 20203326 - 20203391
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 200  Q
    |||||||||||| ||||||||||||| ||||||||||||||||  | ||||||| |||||||||||    
T  20203326 gggtgattttgggtcaaaaattgaccctaaatcacccctctttggtggatgaaggagaagaaacta 20203391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 214
Target Start/End: Complemental strand, 22844079 - 22844000
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttttgctgacg 214  Q
    |||||||||||| ||||||||||||||||||||| |||||||| ||  |||||| |||| ||||||  |||||| |||||    
T  22844079 gggtgattttgggtcaaaaattgaccttaaatcagccctctttgatgaatgaaggagaataaactagggttttggtgacg 22844000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 214
Target Start/End: Complemental strand, 42106139 - 42106060
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttttgctgacg 214  Q
    |||||||||| | ||||||||||||| ||||||||||||||||  | |||||||| ||||||||||  |||||| |||||    
T  42106139 gggtgattttaggtcaaaaattgaccctaaatcacccctctttggtggatgaagatgaagaaactagggttttggtgacg 42106060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 214
Target Start/End: Complemental strand, 43029711 - 43029632
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttttgctgacg 214  Q
    |||||||||||| ||||||| ||| | |||||||||||||||| || ||||||| |||||||||||  |||||| |||||    
T  43029711 gggtgattttgggtcaaaaaatgatcctaaatcacccctctttgatggatgaaggagaagaaactagggttttggtgacg 43029632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 197
Target Start/End: Complemental strand, 50460222 - 50460160
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaa 197  Q
    ||||||||||   ||||||||||||||||||||| |||||||| || ||||||||||||||||    
T  50460222 gggtgattttatgtcaaaaattgaccttaaatcatccctctttgatggatgaagaagaagaaa 50460160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 1220301 - 1220374
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttttg 208  Q
    ||||||||||| |||||||||||| | |||||||||||||||| || | ||||| |||||||| || |||||||    
T  1220301 gggtgattttgaatcaaaaattgatcctaaatcacccctctttgataggtgaaggagaagaaattagagttttg 1220374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 41882494 - 41882559
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 200  Q
    |||| ||||||| ||||||||||||| |||||||| ||||||| || ||||||| |||||||||||    
T  41882494 gggtaattttgggtcaaaaattgaccctaaatcactcctctttgatggatgaaggagaagaaacta 41882559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 50519818 - 50519753
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 200  Q
    |||||||||||| ||||||||||||| |||||||||| |||||  | ||||||| |||||||||||    
T  50519818 gggtgattttgggtcaaaaattgaccctaaatcacccatctttggtggatgaaggagaagaaacta 50519753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 214
Target Start/End: Original strand, 913404 - 913483
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttttgctgacg 214  Q
    |||||||||||| ||||||||||||  | ||| ||||||||||  | |||||||| ||||||||||| |||||| |||||    
T  913404 gggtgattttgggtcaaaaattgactatgaattacccctctttggtggatgaagatgaagaaactaaggttttggtgacg 913483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 194
Target Start/End: Original strand, 1806546 - 1806605
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaag 194  Q
    ||||||||| |||||||||||||||| |||| |||||||||||  | |||||||||||||    
T  1806546 gggtgatttgggatcaaaaattgaccctaaaccacccctctttggtggatgaagaagaag 1806605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 200
Target Start/End: Original strand, 43839602 - 43839667
Alignment:
Q  135 agggtgattttggatcaaaaattgaccttaaatcacccctctttattg-atgaagaagaagaaacta 200  Q
    ||||||| ||||| ||||||||||||| |||||||||| |||||| || |||||| |||||||||||    
T  43839602 agggtgactttgg-tcaaaaattgaccctaaatcacccatctttagtgaatgaaggagaagaaacta 43839667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 22286835 - 22286900
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 200  Q
    |||| ||||| | ||||||||||||| ||||||||||||||||  | ||||||| |||||||||||    
T  22286835 gggtaattttaggtcaaaaattgaccctaaatcacccctctttggtggatgaaggagaagaaacta 22286900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 136 - 214
Target Start/End: Complemental strand, 3390460 - 3390381
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttttgctgacg 214  Q
    |||||||||||| ||||||||||||| |||||||||||||||| || ||||||| |||||||||||  |||||| |||||    
T  3390460 gggtgattttgggtcaaaaattgaccctaaatcacccctctttgatggatgaaggagaagaaactagggttttggtgacg 3390381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 376 - 423
Target Start/End: Complemental strand, 18805960 - 18805913
Alignment:
Q  376 aagaaacttcctaaaccaacgggcagagagcttagggtgtcttttaag 423  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||    
T  18805960 aagaaacttcctaaaccaacgggcagagagcttagggtatcttttaag 18805913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 136 - 214
Target Start/End: Complemental strand, 25771473 - 25771394
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttttgctgacg 214  Q
    |||||||||||| ||||||||||||| |||||||||||||||| || ||||||| |||||||||||  |||||| |||||    
T  25771473 gggtgattttgggtcaaaaattgaccctaaatcacccctctttgatggatgaaggagaagaaactagggttttggtgacg 25771394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 136 - 197
Target Start/End: Complemental strand, 6089921 - 6089859
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaa 197  Q
    |||||||||||| |||||||||||||||||||||||||||||| || ||||||| ||||||||    
T  6089921 gggtgattttgggtcaaaaattgaccttaaatcacccctctttgatggatgaaggagaagaaa 6089859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 136 - 214
Target Start/End: Original strand, 27024225 - 27024304
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttttgctgacg 214  Q
    |||||||||||| ||||||| ||||| |||||||||| ||||| || ||||||| ||||||||||| ||||||| |||||    
T  27024225 gggtgattttgggtcaaaaaatgaccctaaatcacccatctttgatggatgaaggagaagaaactagagttttggtgacg 27024304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 136 - 214
Target Start/End: Complemental strand, 40125417 - 40125338
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttttgctgacg 214  Q
    |||||||||||| ||||||||| ||| ||||||||||||||||  | ||||||| |||||||||||| |||||| |||||    
T  40125417 gggtgattttgggtcaaaaattaaccctaaatcacccctctttggtggatgaaggagaagaaactaaggttttgatgacg 40125338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 137 - 206
Target Start/End: Complemental strand, 3464986 - 3464916
Alignment:
Q  137 ggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttt 206  Q
    ||||||||||||||||||||||||| ||||||||||||||||  | ||||||| |||||||| || |||||    
T  3464986 ggtgattttggatcaaaaattgaccctaaatcacccctctttggtggatgaaggagaagaaattagagttt 3464916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 137 - 207
Target Start/End: Original strand, 25237413 - 25237484
Alignment:
Q  137 ggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagtttt 207  Q
    |||||||||||||||||| |||||  |||||||||||||||| || ||||||| |||| |||||| ||||||    
T  25237413 ggtgattttggatcaaaagttgactctaaatcacccctctttaatagatgaaggagaataaactagagtttt 25237484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 206
Target Start/End: Original strand, 31263053 - 31263111
Alignment:
Q  149 tcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttt 206  Q
    ||||| ||||||| |||||||||||||||| || |||||||||||| ||||||||||||    
T  31263053 tcaaagattgaccctaaatcacccctctttgatggatgaagaagaaaaaactaaagttt 31263111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 178
Target Start/End: Complemental strand, 37883681 - 37883639
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt 178  Q
    |||||||||||||| ||||||||||| ||||||||||||||||    
T  37883681 gggtgattttggattaaaaattgaccctaaatcacccctcttt 37883639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 10589066 - 10589001
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 200  Q
    |||||||||||| ||||||||||||| |||||||||||| |||  | |||||||| ||||||||||    
T  10589066 gggtgattttgggtcaaaaattgaccctaaatcacccctttttggtggatgaagatgaagaaacta 10589001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 15674062 - 15674103
Alignment:
Q  138 gtgattttggatcaaaaattgaccttaaatcacccctcttta 179  Q
    |||||||||| ||||||||||||| |||||||||||||||||    
T  15674062 gtgattttgggtcaaaaattgaccctaaatcacccctcttta 15674103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 25516522 - 25516457
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 200  Q
    |||||||||||| ||||| ||||||| ||||||||||||||||  | ||||||| |||||||||||    
T  25516522 gggtgattttgggtcaaatattgaccctaaatcacccctctttggtggatgaaggagaagaaacta 25516457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 41176890 - 41176825
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 200  Q
    ||||| |||||| ||||||||||||| ||||||||||||||||  | ||||||| |||||||||||    
T  41176890 gggtggttttgggtcaaaaattgaccctaaatcacccctctttggtggatgaaggagaagaaacta 41176825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 44167795 - 44167860
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 200  Q
    |||||||||||| ||||||||||||| || |||||||||||||  | ||||||| |||||||||||    
T  44167795 gggtgattttgggtcaaaaattgaccatatatcacccctctttggtggatgaaggagaagaaacta 44167860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 175
Target Start/End: Original strand, 7640442 - 7640481
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctc 175  Q
    |||||||||||| ||||||||||||| |||||||||||||    
T  7640442 gggtgattttgggtcaaaaattgaccctaaatcacccctc 7640481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 179
Target Start/End: Original strand, 16880045 - 16880088
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttta 179  Q
    |||||||||||| |||||||||||||  ||||||||||||||||    
T  16880045 gggtgattttgggtcaaaaattgaccaaaaatcacccctcttta 16880088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 178
Target Start/End: Complemental strand, 26491331 - 26491289
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt 178  Q
    |||||||||||| ||||||||||| ||||||| ||||||||||    
T  26491331 gggtgattttgggtcaaaaattgaacttaaattacccctcttt 26491289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 200
Target Start/End: Complemental strand, 43566905 - 43566840
Alignment:
Q  135 agggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 200  Q
    ||||||||||||| ||||||||||||| | ||||||||||||||  | ||||||| |||||||||||    
T  43566905 agggtgattttgggtcaaaaattgaccct-aatcacccctctttggtggatgaaggagaagaaacta 43566840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 3603013 - 3602948
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 200  Q
    |||||||||||  |||||| |||||| |||||||||| ||||| || ||||||| |||||||||||    
T  3603013 gggtgattttgagtcaaaagttgaccataaatcacccatctttgatggatgaaggagaagaaacta 3602948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 172
Target Start/End: Original strand, 9715634 - 9715667
Alignment:
Q  139 tgattttggatcaaaaattgaccttaaatcaccc 172  Q
    ||||||||||||||||||||||| ||||||||||    
T  9715634 tgattttggatcaaaaattgaccctaaatcaccc 9715667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 17037737 - 17037778
Alignment:
Q  138 gtgattttggatcaaaaattgaccttaaatcacccctcttta 179  Q
    |||||||||| |||||||||||||  ||||||||||||||||    
T  17037737 gtgattttgggtcaaaaattgaccaaaaatcacccctcttta 17037778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 25623131 - 25623196
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 200  Q
    |||||||||||| |||||||||||   |||||||||||||||| ||  |||||||| |||||||||    
T  25623131 gggtgattttgggtcaaaaattgataataaatcacccctctttgatgtatgaagaaaaagaaacta 25623196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 27191421 - 27191486
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 200  Q
    ||||||||| || ||||||||||||| ||||||| ||||||||  | ||||||| |||||||||||    
T  27191421 gggtgatttagggtcaaaaattgaccctaaatcatccctctttggtggatgaaggagaagaaacta 27191486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 27841235 - 27841300
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 200  Q
    ||||||||| || ||||||||||||| ||||||| ||||||||  | ||||||| |||||||||||    
T  27841235 gggtgatttagggtcaaaaattgaccctaaatcatccctctttggtggatgaaggagaagaaacta 27841300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 178
Target Start/End: Original strand, 42105839 - 42105880
Alignment:
Q  137 ggtgattttggatcaaaaattgaccttaaatcacccctcttt 178  Q
    ||||||||||| ||||||||||||| |||| |||||||||||    
T  42105839 ggtgattttgggtcaaaaattgaccctaaagcacccctcttt 42105880  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 31874112 - 31874047
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 200  Q
    |||||||||||| ||||||||||||| ||||||||| |||||| || ||||||| |||||||||||    
T  31874112 gggtgattttgggtcaaaaattgaccctaaatcacctctctttgatggatgaaggagaagaaacta 31874047  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 136 - 207
Target Start/End: Complemental strand, 9270049 - 9269977
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagtttt 207  Q
    |||||||||||| ||||||||||| | ||||||||||||||||  | ||||||| ||||||||||| ||||||    
T  9270049 gggtgattttgggtcaaaaattgatcataaatcacccctctttggtggatgaaggagaagaaactagagtttt 9269977  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 137 - 200
Target Start/End: Complemental strand, 13864386 - 13864322
Alignment:
Q  137 ggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 200  Q
    ||||||||||| |||||| ||||||||||||||||||||||| ||  |||||| |||||||||||    
T  13864386 ggtgattttggctcaaaagttgaccttaaatcacccctctttgataaatgaaggagaagaaacta 13864322  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 214
Target Start/End: Original strand, 16937428 - 16937504
Alignment:
Q  139 tgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttttgctgacg 214  Q
    ||||||||||||||||||||||| ||||||||||||||||  | |||||||  ||||||||||  |||||| |||||    
T  16937428 tgattttggatcaaaaattgaccctaaatcacccctctttggtggatgaaggtgaagaaactagggttttgatgacg 16937504  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 136 - 207
Target Start/End: Complemental strand, 23766770 - 23766698
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagtttt 207  Q
    |||||||||||| ||||||||||||||||||||||  ||||||  | ||||||| ||||||||||| ||||||    
T  23766770 gggtgattttgggtcaaaaattgaccttaaatcacatctctttggtggatgaagtagaagaaactagagtttt 23766698  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 178
Target Start/End: Complemental strand, 10042789 - 10042747
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt 178  Q
    |||||||||||| ||||||||||||| ||||||||||||||||    
T  10042789 gggtgattttgggtcaaaaattgaccataaatcacccctcttt 10042747  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 44295341 - 44295284
Alignment:
Q  139 tgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaaga 195  Q
    ||||||||| ||||||||||||| |||||||||||||||| || ||||||| ||||||    
T  44295341 tgattttgggtcaaaaattgaccctaaatcacccctctttgatggatgaaggagaaga 44295284  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 214
Target Start/End: Complemental strand, 15665567 - 15665488
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctctttatt-gatgaagaagaagaaactaaagttttgctgacg 214  Q
    |||||||||||  |||||| |||||| |||||||||||||||| || |||||||   ||||||||| ||||||| |||||    
T  15665567 gggtgattttgtgtcaaaagttgaccctaaatcacccctctttgttggatgaagggaaagaaactagagttttggtgacg 15665488  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 197
Target Start/End: Complemental strand, 9992693 - 9992631
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctctttattg-atgaagaagaagaaa 197  Q
    |||||||||||| ||||||||||||| ||||||||||| || || || |||||| ||||||||    
T  9992693 gggtgattttgggtcaaaaattgaccctaaatcacccccctctaatgaatgaaggagaagaaa 9992631  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 178
Target Start/End: Original strand, 27534489 - 27534527
Alignment:
Q  140 gattttggatcaaaaattgaccttaaatcacccctcttt 178  Q
    ||||| |||||||||||||||| ||||||||||||||||    
T  27534489 gatttgggatcaaaaattgaccctaaatcacccctcttt 27534527  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 178
Target Start/End: Complemental strand, 37658994 - 37658952
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt 178  Q
    |||||||||||  ||||||||||||| ||||||||||||||||    
T  37658994 gggtgattttgtgtcaaaaattgaccctaaatcacccctcttt 37658952  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 36545867 - 36545932
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 200  Q
    ||||||| |||| ||| ||||||||||||||||| ||||||||  | ||||||| |||||||||||    
T  36545867 gggtgatattgggtcacaaattgaccttaaatcatccctctttggtggatgaaggagaagaaacta 36545932  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 196
Target Start/End: Original strand, 39067816 - 39067860
Alignment:
Q  152 aaaattgaccttaaatcacccctctttattgatgaagaagaagaa 196  Q
    |||||||||||||||||||||||||| |  || ||||||||||||    
T  39067816 aaaattgaccttaaatcacccctcttaaaagaagaagaagaagaa 39067860  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 32457674 - 32457601
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttta-ttgatgaagaagaagaaactaaagttttg 208  Q
    |||||||||||| ||||||||||||  ||||||||||||||||| | ||||||| |||| ||||||| ||||||    
T  32457674 gggtgattttgggtcaaaaattgacgctaaatcacccctctttagtagatgaaggagaaaaaactaaggttttg 32457601  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 214
Target Start/End: Complemental strand, 16913356 - 16913277
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttttgctgacg 214  Q
    ||||||||| || ||||||||||||| ||||||||||||||||  | ||||||| |||||||||||  |||||| |||||    
T  16913356 gggtgatttcgggtcaaaaattgaccctaaatcacccctctttggtggatgaaggagaagaaactagggttttggtgacg 16913277  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 175
Target Start/End: Complemental strand, 19759816 - 19759777
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctc 175  Q
    |||||||||||| ||||||||||||| |||||||||||||    
T  19759816 gggtgattttgggtcaaaaattgaccctaaatcacccctc 19759777  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 33194631 - 33194568
Alignment:
Q  138 gtgattttggatcaaaaattgaccttaaatcacccctctt-tattgatgaagaagaagaaacta 200  Q
    |||||||||||||||||||||||| |||||||||  | ||  || |||||||||||||||||||    
T  33194631 gtgattttggatcaaaaattgaccctaaatcaccaatattgaatggatgaagaagaagaaacta 33194568  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 178
Target Start/End: Original strand, 12576564 - 12576606
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctcttt 178  Q
    ||||||||| || ||||||||||||| ||||||||||||||||    
T  12576564 gggtgatttagggtcaaaaattgaccctaaatcacccctcttt 12576606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 177
Target Start/End: Complemental strand, 32804322 - 32804281
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctctt 177  Q
    |||||||||||| ||||||||||||| |||||||||| ||||    
T  32804322 gggtgattttgggtcaaaaattgaccctaaatcacccatctt 32804281  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 199
Target Start/End: Complemental strand, 34020643 - 34020582
Alignment:
Q  139 tgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaact 199  Q
    |||| |||| ||||||||||||| |||| |||||||||||  | ||||||||||||||||||    
T  34020643 tgatgttgggtcaaaaattgaccctaaaccacccctctttggtagatgaagaagaagaaact 34020582  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 176
Target Start/End: Original strand, 548951 - 548991
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatcacccctct 176  Q
    |||||||||||| |||||||||||||||| ||||| |||||    
T  548951 gggtgattttgggtcaaaaattgaccttatatcactcctct 548991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 214
Target Start/End: Complemental strand, 20845036 - 20844956
Alignment:
Q  136 gggtgattttggatcaaaaattgaccttaaatca-cccctcttt-attgatgaagaagaagaaactaaagttttgctgacg 214  Q
    |||||||||||| ||||||||||||||| ||| | |||||||||  | ||| ||| |||||||||||| |||||| |||||    
T  20845036 gggtgattttgggtcaaaaattgaccttgaattaccccctctttggtagataaaggagaagaaactaaggttttggtgacg 20844956  T

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Target: scaffold0045 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 9736 - 9799
Alignment:
Q  138 gtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaacta 200  Q
    |||||||||| ||||||||||||| ||||||| ||||||||  | ||||||| |||||||||||    
T  9736 gtgattttgggtcaaaaattgaccctaaatcatccctctttggtggatgaaggagaagaaacta 9799  T

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Target: scaffold1294 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1294
Description:

Target: scaffold1294; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 214
Target Start/End: Complemental strand, 805 - 729
Alignment:
Q  139 tgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactaaagttttgctgacg 214  Q
    ||||||| | ||||||||||||||||||||||  || |||  | ||||||| ||||||||||| ||||||| |||||    
T  805 tgatttttggtcaaaaattgaccttaaatcacatctttttggtggatgaaggagaagaaactagagttttgatgacg 729  T

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Target: scaffold0012 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 214
Target Start/End: Complemental strand, 244647 - 244583
Alignment:
Q  151 aaaaattgaccttaaatcacccctctttattg-atgaagaagaagaaactaaagttttgctgacg 214  Q
    ||||||||||| ||||||| ||||||||  || ||||||||||||||||| | |||||| |||||    
T  244647 aaaaattgaccctaaatcaaccctcttttgtggatgaagaagaagaaacttaggttttggtgacg 244583  T

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