View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9345_high_7 (Length: 280)
Name: NF9345_high_7
Description: NF9345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9345_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 266
Target Start/End: Complemental strand, 43691639 - 43691391
Alignment:
| Q |
19 |
aaaagatgtttgtattgttggtgtagaggtttcattttataagtcaaaatacaaaaagcaagtgaatcaagctactagcttaactacttcctcaacatct |
118 |
Q |
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| T |
43691639 |
aaaagatgtttgtattgttggtgtagaggtttcattttataagtcaaaatacaaaaagcaagtgaatcaagctactagcttaactacttcctcaacatct |
43691540 |
T |
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| Q |
119 |
agtggtcaaactgaaaatctggaagttgaagtcacaaggccaatgctagaagttcctggccaaaatcaaggcgaacatatggatttcaagggtttaggac |
218 |
Q |
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| T |
43691539 |
agtggtcaaactgaaaatctggaagttgaagtcacaaggccaatgctagaagttcctggccaaaatcaaggcgaacatatggatttcaagggtttaggac |
43691440 |
T |
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| Q |
219 |
aaa-ttgaaaaagactttgttccattactagtagaattgtgttctctgc |
266 |
Q |
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| T |
43691439 |
aaatttgaaaaagactttgtttcattactagtagaagtgtgttctctgc |
43691391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 228
Target Start/End: Complemental strand, 43696632 - 43696591
Alignment:
| Q |
187 |
aggcgaacatatggatttcaagggtttaggacaaattgaaaa |
228 |
Q |
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| T |
43696632 |
aggcgagcttatggatttcaagggtttaggacaaatagaaaa |
43696591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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