View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9345_low_1 (Length: 481)
Name: NF9345_low_1
Description: NF9345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9345_low_1 |
 | |
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| [»] scaffold0061 (1 HSPs) |
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| [»] scaffold0017 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 299
Target Start/End: Original strand, 44614444 - 44614725
Alignment:
| Q |
18 |
actccagattcttgaacactttgatattgaaagtcatcatgtggtggaagcagtaattctacctggcaggtatacttatgttcctttttactgaaattgt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44614444 |
actccagattcttgaacactttgatattgaaagtcatcatgtggtggaagcagtaattctacctggcaggtatacttatgttcctttttactgaaattgt |
44614543 |
T |
|
| Q |
118 |
ggtttattaactcaatcatgaatacttttaatattaaaaatatctttctttgttgatatatgtgtaactaaagcatttctataatttgtattgcatttct |
217 |
Q |
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|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44614544 |
ggtttattaactcaatcatgaatacttttaatattgaaaatatctttctttgttgatatatgtgtaactaaagcatttctataatttgtattgcatttct |
44614643 |
T |
|
| Q |
218 |
cactgttcaataatctgtcatcaaagacagtatcaatctcataatatatgtcaccgttgttttcatagttgaattaatctat |
299 |
Q |
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|||||||||||||||| ||| ||||||| ||||||||||||||||||| ||| ||||||||||||||| | ||||||||| |
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| T |
44614644 |
cactgttcaataatcttccattaaagacaatatcaatctcataatatatatcattgttgttttcatagttaagttaatctat |
44614725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 90 - 299
Target Start/End: Complemental strand, 44794053 - 44793844
Alignment:
| Q |
90 |
tacttatgttcctttttactgaaattgtggtttattaactcaatcatgaatacttttaatattaaaaatatctttctttgttgatatatgtgtaactaaa |
189 |
Q |
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||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
44794053 |
tacttatatttctttttactgaaattgtggtttattaactcaatcatgaatacttttaatattgaaaatatctttctttgttgatatatgtgtaactaaa |
44793954 |
T |
|
| Q |
190 |
gcatttctataatttgtattgcatttctcactgttcaataatctgtcatcaaagacagtatcaatctcataatatatgtcaccgttgttttcatagttga |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||| ||| ||||||||||||||| | |
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| T |
44793953 |
gcatttctataatttgtattgcatttctcactgttcaataatcttccattaaagacaatatcaatctcataatatatatcattgttgttttcatagttaa |
44793854 |
T |
|
| Q |
290 |
attaatctat |
299 |
Q |
| |
|
||||||||| |
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| T |
44793853 |
gttaatctat |
44793844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 178 - 343
Target Start/End: Complemental strand, 11542579 - 11542418
Alignment:
| Q |
178 |
tgtgtaactaaagcatttctataatttgtattgcatttctcactgttcaataatctgtcatcaaagacagtatcaatctcataatatatgtcaccgttgt |
277 |
Q |
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||||||||||||||| ||| | |||||||||||||||||||| || ||||||| |||||||||||||| |||||||| ||||| ||| ||| | |||| |
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| T |
11542579 |
tgtgtaactaaagcacttcaacaatttgtattgcatttctcagtgatcaataacatgtcatcaaagacaatatcaatcccataacctatatcatcattgt |
11542480 |
T |
|
| Q |
278 |
tttcatagttgaattaatctatacatatcacatgtcctg-atcaaatgattagttacttgtttttat |
343 |
Q |
| |
|
|| ||| | |||||||| |||| |||||||||||| || || ||||||||||| ||||||||| |
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|
| T |
11542479 |
tt-----gttaagttaatctagacatgtcacatgtcctgaataaattgattagttacatgtttttat |
11542418 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 389 - 472
Target Start/End: Complemental strand, 44783614 - 44783532
Alignment:
| Q |
389 |
agtactaaaattaattcttatttttgcaggatctcgtattcctaaagcatgggatgattacattgtttgctgttatagaataat |
472 |
Q |
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|
||||||||||||||||||||||||||||||||||| | |||||| | |||||| |||||||||| |||||||||||||||||| |
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| T |
44783614 |
agtactaaaattaattcttatttttgcaggatctcat-ttcctactgtatgggaggattacattgcttgctgttatagaataat |
44783532 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 17809993 - 17809928
Alignment:
| Q |
18 |
actccagattcttgaacactttgatattgaaagtcatcatgtggtggaagcagtaattctacctgg |
83 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| |||||||||||||| | ||||||||| |
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| T |
17809993 |
actccagattcttgaacactttgatattgaaagtcttcacgtggtggaagcagtgaatctacctgg |
17809928 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 273 - 341
Target Start/End: Complemental strand, 44783694 - 44783626
Alignment:
| Q |
273 |
gttgttttcatagttgaattaatctatacatatcacatgtcctgatcaaatgattagttacttgttttt |
341 |
Q |
| |
|
||||||||||||||| | ||||| ||||||||||||||||| |||| |||| ||||||||||||||||| |
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| T |
44783694 |
gttgttttcatagttaagttaatttatacatatcacatgtcttgattaaattattagttacttgttttt |
44783626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 44784020 - 44783964
Alignment:
| Q |
18 |
actccagattcttgaacactttgatattgaaagtcatcatgtggtggaagcagtaat |
74 |
Q |
| |
|
|||||| ||||||||| ||||| ||||||| | ||||||| |||||||||||||||| |
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|
| T |
44784020 |
actccaaattcttgaatactttaatattgagaatcatcatctggtggaagcagtaat |
44783964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 35900880 - 35900934
Alignment:
| Q |
19 |
ctccagattcttgaacactttgatattgaaagtcatcatgtggtggaagcagtaa |
73 |
Q |
| |
|
||||| |||||||||||| |||||||||||| || || ||||| ||||||||||| |
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|
| T |
35900880 |
ctccaaattcttgaacacattgatattgaaaatcttcttgtggaggaagcagtaa |
35900934 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 213; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 168 - 472
Target Start/End: Complemental strand, 29505639 - 29505336
Alignment:
| Q |
168 |
tgttgatatatgtgtaactaaagcatttctataatttgtattgcatttctcactgttcaataatctgtcatcaaagacagtatcaatctcataatatatg |
267 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29505639 |
tgttgatatatgtgtaactaaacattttctacaatttgtattgcatttctcaatgttcaataatctgtcatcaaagacagtatcaatctcataatataca |
29505540 |
T |
|
| Q |
268 |
tcaccgttgttttcatagttgaattaatctatacatatcacatgtcctgatcaaatgattagttacttgtttttattattttttcatgtactaaaattgc |
367 |
Q |
| |
|
||| ||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||| |||||||||||||| |
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|
| T |
29505539 |
tcatcgtagttttcatagtcaagttaatctatacatatcacatgtcctgatcaaatgattagttacttgtgttta-tgttttttcttgtactaaaattgc |
29505441 |
T |
|
| Q |
368 |
actgatttgatgacatttcgaagtactaaaattaattcttatttttgcaggatctcgtattcctaaagcatgggatgattacattgtttgctgttataga |
467 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||| |
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| T |
29505440 |
actgattttatgacattttcaagtactaaaattaattcttatttttgcaggatctcgtattcctaaagcatgggatgattacatcgttttctattataga |
29505341 |
T |
|
| Q |
468 |
ataat |
472 |
Q |
| |
|
||||| |
|
|
| T |
29505340 |
ataat |
29505336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 29505851 - 29505800
Alignment:
| Q |
20 |
tccagattcttgaacactttgatattgaaagtcatcatgtggtggaagcagt |
71 |
Q |
| |
|
|||| ||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
29505851 |
tccaaattcttgaatgctttgatattgaaagtgttcatgtggtggaagcagt |
29505800 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 168 - 266
Target Start/End: Complemental strand, 27267 - 27169
Alignment:
| Q |
168 |
tgttgatatatgtgtaactaaagcatttctataatttgtattgcatttctcactgttcaataatctgtcatcaaagacagtatcaatctcataatatat |
266 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||| |||||||| |||||||||| | ||||||||| ||||||||| |
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|
| T |
27267 |
tgttgatatatttgtaactaaagcatttctacaatttgtattgcatttctcagtgtttaataatctttcatcaaagaaaatatcaatcttataatatat |
27169 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 168 - 266
Target Start/End: Original strand, 171525 - 171623
Alignment:
| Q |
168 |
tgttgatatatgtgtaactaaagcatttctataatttgtattgcatttctcactgttcaataatctgtcatcaaagacagtatcaatctcataatatat |
266 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||| |||||||| |||||||||| | ||||||||| ||||||||| |
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|
| T |
171525 |
tgttgatatatttgtaactaaagcatttctacaatttgtattgcatttctcagtgtttaataatctttcatcaaagaaaatatcaatcttataatatat |
171623 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 182400 - 182450
Alignment:
| Q |
18 |
actccagattcttgaacactttgatattgaaagtcatcatgtggtggaagc |
68 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
182400 |
actccagattcttgaacactttgatattgaaagtcatcatgtggtggaagc |
182450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 26730058 - 26730111
Alignment:
| Q |
18 |
actccagattcttgaacactttgatattgaaagtcatcatgtggtggaagcagt |
71 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||| | |||||||||||||||||| |
|
|
| T |
26730058 |
actccagattcttgaacaccttgatcttgaaagccttcatgtggtggaagcagt |
26730111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 361 - 472
Target Start/End: Original strand, 26730285 - 26730398
Alignment:
| Q |
361 |
aaattgcactgatttgatgacatttcgaagtactaaaattaa-ttcttatttttgcaggatctcgtattcctaaagcatgggatgattaca-ttgtttgc |
458 |
Q |
| |
|
||||||||||| ||||||| ||||| |||||||||| |||| || ||| |||||||||||||| ||||| | | ||||||||||| || || ||||| |
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|
| T |
26730285 |
aaattgcactgctttgatgttatttccaagtactaaatttaattttttacttttgcaggatctcttattcgttctgtatgggatgattgcatttttttgc |
26730384 |
T |
|
| Q |
459 |
tgttatagaataat |
472 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
26730385 |
tgttgtagaataat |
26730398 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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