View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9345_low_12 (Length: 281)
Name: NF9345_low_12
Description: NF9345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9345_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 10456630 - 10456367
Alignment:
| Q |
1 |
aaataacgttagtttaatgaaattgttatgtcttttgacatcgtcattatannnnnnnaatatgggtaaaaaatttaatcaatatttttaaatcagagaa |
100 |
Q |
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| T |
10456630 |
aaataacgttagtttaatgaaattgttatgtcttttgacatcgtcattatatttttttaatatgtgtaaaaaatttaatcaatatttttaaatcagagaa |
10456531 |
T |
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| Q |
101 |
acagtaagtttattatttgctataatattttttgtttccttgtaaaatgatttatattttggaattatcttattgaaaaggtagtttggaactagataaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10456530 |
acagtaagtttattatttgctataatattttttgtttccttgtaaaatgatttatattttggaattatcttattgaaaaggtagtttggaactagataaa |
10456431 |
T |
|
| Q |
201 |
cattgatactgtcttttttgtcttttgttttccacattgtttcaatcacttcttcgtttcttgg |
264 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
10456430 |
cattgatactgtcttttttgtcttttgttttccacattgtttcaatcacttcttcatttcttgg |
10456367 |
T |
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