View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9345_low_16 (Length: 276)
Name: NF9345_low_16
Description: NF9345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9345_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 45737240 - 45736990
Alignment:
| Q |
18 |
caaccggtggattagtgaacaaaatggttggtcgaattggcgacacgccactcataggtgctggaacatatgccaatgaattatgtgcagtttctgcaac |
117 |
Q |
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| T |
45737240 |
caaccggtggattagtgaacaaaatggttggtcgaattggcgacacgccactcataggtgctggaacatatgccaatgaattatgtgcagtttctgcaac |
45737141 |
T |
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| Q |
118 |
aggaaaaggcgaagcagtaatacgcgggacagtagcaagagatgtggctgcaatgatggaattcaaaggtctttctctaaaggaagctgctgattgtgtt |
217 |
Q |
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| T |
45737140 |
aggaaaaggcgaagcagtaatacgcgggacagtagcaagagatgtggctgcgatgatggaattcaaaggtctttctctaaaggaagctgctgattgtgtt |
45737041 |
T |
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| Q |
218 |
gtacatgagcgcacaccaaagggtacggttggtttggttgctgtctctgct |
268 |
Q |
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| T |
45737040 |
gtacatgagcgcacaccaaagggtacagttggtttggttgctgtgtctgct |
45736990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 45731910 - 45731660
Alignment:
| Q |
18 |
caaccggtggattagtgaacaaaatggttggtcgaattggcgacacgccactcataggtgctggaacatatgccaatgaattatgtgcagtttctgcaac |
117 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45731910 |
caactggtggattagtgaacaaaatggttggtcgaattggtgacacgccactcataggtgctggaacatatgccaatgaattatgtgcagtttctgcaac |
45731811 |
T |
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| Q |
118 |
aggaaaaggcgaagcagtaatacgcgggacagtagcaagagatgtggctgcaatgatggaattcaaaggtctttctctaaaggaagctgctgattgtgtt |
217 |
Q |
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| T |
45731810 |
agggataggcgaagcactaatacgcgggacagtagcaagagatgtggctgcaatgatggaattcaaaggtctttctctaaaggaagctgctgattgtgtt |
45731711 |
T |
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| Q |
218 |
gtacatgagcgcacaccaaagggtacggttggtttggttgctgtctctgct |
268 |
Q |
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| T |
45731710 |
gtacatgagcgcataccaaagggcactgttggtttggttgctgtgtctgct |
45731660 |
T |
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