View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9345_low_17 (Length: 203)
Name: NF9345_low_17
Description: NF9345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9345_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 9743733 - 9743854
Alignment:
| Q |
18 |
cacctaagataactcctataacaccaccgactcctaccacatcacaaccacctaagacgactcctgccaaaccaccaacactgactccttttggacaacc |
117 |
Q |
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| T |
9743733 |
cacctaagataactcctataacaccaccaactcctatcacatcacaaccacctaagacgactcctgccaaatcaccaactctgactccttctggacaacc |
9743832 |
T |
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| Q |
118 |
aactcgtccagtaacacaacca |
139 |
Q |
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| T |
9743833 |
aactcgtccagtaacccaacca |
9743854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 10 - 186
Target Start/End: Original strand, 9743236 - 9743433
Alignment:
| Q |
10 |
gacatcaccacctaagataactcctataacaccaccgactcctaccacatcacaaccacctaagacgactcctgccaaaccaccaa-------------- |
95 |
Q |
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| T |
9743236 |
gacatcaccacctaagataactcctataacaccaccgactcctaccacatcacaaccacctaagacgactcttgccaaaccaccaactcttaccacacca |
9743335 |
T |
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| Q |
96 |
-------cactgactccttttggacaaccaactcgtccagtaacacaaccacctaggaatcctcctccttcaacaccaccaacttcttccacacttcc |
186 |
Q |
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| T |
9743336 |
ccaccatctctgactccttctggacaaccacctcgtccagtaacacaacaacctaggaatcctccaacttcaacaccaccaactccttcaacacttcc |
9743433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 9742765 - 9742851
Alignment:
| Q |
10 |
gacatcaccacctaagataactcctataacaccaccgactcctaccacatcacaaccacctaagacgactcctgccaaaccaccaac |
96 |
Q |
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| T |
9742765 |
gacatcaccacctaagataactcctataacaccaccgactcctaccaaatcacaaccacctaagacgactcctgccaaaccaccaac |
9742851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 98 - 173
Target Start/End: Original strand, 9742874 - 9742949
Alignment:
| Q |
98 |
ctgactccttttggacaaccaactcgtccagtaacacaaccacctaggaatcctcctccttcaacaccaccaactt |
173 |
Q |
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| T |
9742874 |
ctgactccttctggacaaccacctcgtccagtaacacaacaacctaggaatcctccaacttcaacacttccaactt |
9742949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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